RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 FABP9Q0Z7S8 132 aa7.09□□□□□ -1.27
SKA1-204ENST00000488454 LELP1Q5T871 98 aa7.09□□□□□ -1.27
SKA1-204ENST00000488454 CBLN2Q8IUK8 224 aa7.09□□□□□ -1.27
SKA1-204ENST00000488454 CSMD3Q7Z407 3707 aa7.09□□□□□ -1.27
SKA1-204ENST00000488454 LCE6AA0A183 80 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 SDHAF1A6NFY7 115 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 VCYO14598 125 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 GAS8-AS1O95177 125 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 SUMO2P61956 95 aaKnown RBP7.08□□□□□ -1.28
SKA1-204ENST00000488454 COTL1Q14019 142 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 PRELID3AQ96N28 172 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 C20orf78Q9BR46 151 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 UPK3BQ9BT76 320 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 Q9H8V8 135 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 TRAPPC1Q9Y5R8 145 aa7.08□□□□□ -1.28
SKA1-204ENST00000488454 TRBV6-8A0A0A6YYG3 113 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 I3L3M4 83 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 PHOX2AO14813 284 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 SIVA1O15304 175 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 ATP6V1G1O75348 118 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 TNFRSF6BO95407 300 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 RPS10P46783 165 aaKnown RBP7.07□□□□□ -1.28
SKA1-204ENST00000488454 KIAA1644Q3SXP7 199 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 NRACQ8N912 160 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 LAMTOR2Q9Y2Q5 125 aa7.07□□□□□ -1.28
SKA1-204ENST00000488454 TRBV25-1A0A075B6N4 114 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 TRAV9-2A0A087WT02 112 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 IGHV1-24A0A0C4DH33 117 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 TMEM262E9PQX1 116 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 YPEL4Q96NS1 127 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 KIR2DL4Q99706 377 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 TMEM70Q9BUB7 260 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 MAP1LC3AQ9H492 121 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 TENM2Q9NT68 2774 aa7.06□□□□□ -1.28
SKA1-204ENST00000488454 TRBV27A0A0K0K1C4 114 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 UBE2L6O14933 153 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 TCAPO15273 167 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 NPYP01303 97 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 FCER1GP30273 86 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 AMTP48728 403 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 POLR2KP53803 58 aaKnown RBP7.05□□□□□ -1.28
SKA1-204ENST00000488454 PKIAP61925 76 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 CHCHD5Q9BSY4 110 aa7.05□□□□□ -1.28
SKA1-204ENST00000488454 IGLV2-18A0A075B6J9 118 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 A0A087WX48 190 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 LOC389332A0A1B0GUA5 103 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 SCO1O75880 301 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 RAB5AP20339 215 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 RPL32P62910 135 aaKnown RBP7.04□□□□□ -1.28
SKA1-204ENST00000488454 IQCJQ1A5X6 159 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 NTM-AS1Q6ZSK4 140 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 WFDC10BQ8IUB3 73 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 DEFB104AQ8WTQ1 72 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 TMEM243Q9BU79 118 aa7.04□□□□□ -1.28
SKA1-204ENST00000488454 TTC32Q5I0X7 151 aa7.03□□□□□ -1.28
SKA1-204ENST00000488454 SMIM2Q9BVW6 85 aa7.03□□□□□ -1.28
SKA1-204ENST00000488454 COLCA2A8K830 154 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 PRSS47A8MTI9 375 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 K7EP13 123 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 M0R2N4 97 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 TSHBP01222 138 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 IGHV3-30P01768 117 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 IGHV3-33P01772 117 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 DNAH10OSP0CZ25 163 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 IGHV3-30-3P0DP02 117 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 IGHV3-30-5P0DP03 117 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 GAGE6Q13070 117 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 C10orf126Q8N4M7 172 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 PRSS3P2Q8NHM4 247 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 TMEM18Q96B42 140 aa7.02□□□□□ -1.29
SKA1-204ENST00000488454 ALKBH7Q9BT30 221 aaPredicted RBP7.02□□□□□ -1.29
SKA1-204ENST00000488454 NXT2Q9NPJ8 142 aaKnown RBP7.02□□□□□ -1.29
SKA1-204ENST00000488454 VPS13DQ5THJ4 4388 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 NBDYA0A0U1RRE5 68 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 SMAGPQ0VAQ4 97 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 LINC01556Q5JQF7 62 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 AMMECR1LQ6DCA0 310 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 NIT1Q86X76 327 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 Q8N8P6 123 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 CHCHD7Q9BUK0 85 aa7.01□□□□□ -1.29
SKA1-204ENST00000488454 ALMS1Q8TCU4 4167 aa7□□□□□ -1.29
SKA1-204ENST00000488454 DNAH1Q9P2D7 4330 aa7□□□□□ -1.29
SKA1-204ENST00000488454 BIRC6Q9NR09 4857 aa7□□□□□ -1.29
SKA1-204ENST00000488454 H7C423 109 aa7□□□□□ -1.29
SKA1-204ENST00000488454 TRGC2P03986 189 aa7□□□□□ -1.29
SKA1-204ENST00000488454 KRTAP4-7Q9BYR0 210 aa7□□□□□ -1.29
SKA1-204ENST00000488454 SACSQ9NZJ4 4579 aa7□□□□□ -1.29
SKA1-204ENST00000488454 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.99□□□□□ -1.29
SKA1-204ENST00000488454 IGKV2-29A2NJV5 120 aaPredicted RBP6.99□□□□□ -1.29
SKA1-204ENST00000488454 K7EMI3 77 aa6.99□□□□□ -1.29
SKA1-204ENST00000488454 ESDP10768 282 aa6.99□□□□□ -1.29
SKA1-204ENST00000488454 G0S2P27469 103 aa6.99□□□□□ -1.29
SKA1-204ENST00000488454 IFI27P40305 119 aaPredicted RBP6.99□□□□□ -1.29
SKA1-204ENST00000488454 ORMDL2Q53FV1 153 aa6.99□□□□□ -1.29
SKA1-204ENST00000488454 RNASEKQ6P5S7 137 aaKnown RBP6.99□□□□□ -1.29
SKA1-204ENST00000488454 FA2HQ7L5A8 372 aa6.99□□□□□ -1.29
SKA1-204ENST00000488454 TMEM101Q96IK0 257 aa6.99□□□□□ -1.29
SKA1-204ENST00000488454 ANGP03950 147 aaKnown RBP6.98□□□□□ -1.29
SKA1-204ENST00000488454 RAB5BP61020 215 aa6.98□□□□□ -1.29
SKA1-204ENST00000488454 RBX1P62877 108 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms