RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 RNASE7Q9H1E1 156 aaKnown RBP14.61□□□□□ -0.07
PTPN4-211ENST00000488279 UBE2L6O14933 153 aa14.6□□□□□ -0.07
PTPN4-211ENST00000488279 COTL1Q14019 142 aa14.6□□□□□ -0.07
PTPN4-211ENST00000488279 IGLV4-60A0A075B6I1 120 aa14.59□□□□□ -0.07
PTPN4-211ENST00000488279 K7EN84 100 aa14.59□□□□□ -0.07
PTPN4-211ENST00000488279 AMTP48728 403 aa14.58□□□□□ -0.08
PTPN4-211ENST00000488279 KRTAP10-4P60372 401 aaPredicted RBP14.58□□□□□ -0.08
PTPN4-211ENST00000488279 SMIM15Q7Z3B0 74 aa14.57□□□□□ -0.08
PTPN4-211ENST00000488279 GATD1Q8NB37 220 aa14.57□□□□□ -0.08
PTPN4-211ENST00000488279 GFRA4Q9GZZ7 299 aa14.56□□□□□ -0.08
PTPN4-211ENST00000488279 hDV102S1A0JD36 115 aa14.55□□□□□ -0.08
PTPN4-211ENST00000488279 BLOC1S1P78537 153 aa14.55□□□□□ -0.08
PTPN4-211ENST00000488279 Q6ZNX1 250 aa14.55□□□□□ -0.08
PTPN4-211ENST00000488279 GTSF1Q8WW33 167 aa14.55□□□□□ -0.08
PTPN4-211ENST00000488279 TRAV26-2A0A0B4J265 109 aa14.54□□□□□ -0.08
PTPN4-211ENST00000488279 TMEM250H0YL14 139 aa14.54□□□□□ -0.08
PTPN4-211ENST00000488279 CNBPP62633 177 aaKnown RBP14.54□□□□□ -0.08
PTPN4-211ENST00000488279 SDIM1Q6ZPB5 146 aa14.54□□□□□ -0.08
PTPN4-211ENST00000488279 AKAP14Q86UN6 197 aa14.53□□□□□ -0.08
PTPN4-211ENST00000488279 AP5S1Q9NUS5 200 aa14.53□□□□□ -0.08
PTPN4-211ENST00000488279 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.53□□□□□ -0.08
PTPN4-211ENST00000488279 GATCO43716 136 aaKnown RBP14.52□□□□□ -0.09
PTPN4-211ENST00000488279 RPL37AP61513 92 aaKnown RBP14.52□□□□□ -0.09
PTPN4-211ENST00000488279 TEX261Q6UWH6 196 aa14.52□□□□□ -0.09
PTPN4-211ENST00000488279 ALKAL2Q6UX46 152 aa14.52□□□□□ -0.09
PTPN4-211ENST00000488279 A8MWL6 223 aa14.51□□□□□ -0.09
PTPN4-211ENST00000488279 FOXA3P55318 350 aaPredicted RBP14.51□□□□□ -0.09
PTPN4-211ENST00000488279 LRP1Q07954 4544 aaKnown RBP14.5□□□□□ -0.09
PTPN4-211ENST00000488279 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.5□□□□□ -0.09
PTPN4-211ENST00000488279 FAM231DQ6ZW35 169 aa14.5□□□□□ -0.09
PTPN4-211ENST00000488279 RPL39LQ96EH5 51 aaKnown RBP14.5□□□□□ -0.09
PTPN4-211ENST00000488279 NCR2O95944 276 aa14.49□□□□□ -0.09
PTPN4-211ENST00000488279 OXTP01178 125 aa14.49□□□□□ -0.09
PTPN4-211ENST00000488279 CEBPGP53567 150 aa14.49□□□□□ -0.09
PTPN4-211ENST00000488279 AMMECR1LQ6DCA0 310 aa14.49□□□□□ -0.09
PTPN4-211ENST00000488279 LYPD6BQ8NI32 183 aa14.49□□□□□ -0.09
PTPN4-211ENST00000488279 IGHV3-64A0A075B6Q5 118 aa14.48□□□□□ -0.09
PTPN4-211ENST00000488279 PANO1I0J062 215 aa14.48□□□□□ -0.09
PTPN4-211ENST00000488279 CFAP161Q6P656 301 aa14.48□□□□□ -0.09
PTPN4-211ENST00000488279 DPH3Q96FX2 82 aa14.48□□□□□ -0.09
PTPN4-211ENST00000488279 IGKV3OR2-268A0A0C4DH90 116 aa14.47□□□□□ -0.09
PTPN4-211ENST00000488279 GAGE12HA6NDE8 117 aa14.47□□□□□ -0.09
PTPN4-211ENST00000488279 SLPIP03973 132 aa14.47□□□□□ -0.09
PTPN4-211ENST00000488279 SDHAF1A6NFY7 115 aa14.46□□□□□ -0.09
PTPN4-211ENST00000488279 H7C423 109 aa14.46□□□□□ -0.09
PTPN4-211ENST00000488279 APCSP02743 223 aa14.46□□□□□ -0.09
PTPN4-211ENST00000488279 CT83Q5H943 113 aa14.46□□□□□ -0.09
PTPN4-211ENST00000488279 RNASEKQ6P5S7 137 aaKnown RBP14.46□□□□□ -0.09
PTPN4-211ENST00000488279 BORCS7Q96B45 105 aa14.46□□□□□ -0.09
PTPN4-211ENST00000488279 hCG_2014768A0A024R1R8 64 aa14.45□□□□□ -0.1
PTPN4-211ENST00000488279 EIF5A2Q9GZV4 153 aaKnown RBP14.45□□□□□ -0.1
PTPN4-211ENST00000488279 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.44□□□□□ -0.1
PTPN4-211ENST00000488279 IGKV2-29A2NJV5 120 aaPredicted RBP14.44□□□□□ -0.1
PTPN4-211ENST00000488279 I3L3M4 83 aa14.44□□□□□ -0.1
PTPN4-211ENST00000488279 PMCHP20382 165 aa14.44□□□□□ -0.1
PTPN4-211ENST00000488279 CIRBPQ14011 172 aaKnown RBP14.44□□□□□ -0.1
PTPN4-211ENST00000488279 FAT3Q8TDW7 4589 aa14.44□□□□□ -0.1
PTPN4-211ENST00000488279 FGF6P10767 208 aa14.43□□□□□ -0.1
PTPN4-211ENST00000488279 SMIM7Q9BQ49 75 aa14.43□□□□□ -0.1
PTPN4-211ENST00000488279 TRBV6-5A0A0K0K1A5 114 aa14.42□□□□□ -0.1
PTPN4-211ENST00000488279 C15orf56Q8N910 161 aa14.42□□□□□ -0.1
PTPN4-211ENST00000488279 CHCHD10Q8WYQ3 142 aaPredicted RBP14.42□□□□□ -0.1
PTPN4-211ENST00000488279 RNF185Q96GF1 192 aa14.42□□□□□ -0.1
PTPN4-211ENST00000488279 NDUFS6O75380 124 aaKnown RBP14.41□□□□□ -0.1
PTPN4-211ENST00000488279 LINC01551Q86U37 167 aa14.41□□□□□ -0.1
PTPN4-211ENST00000488279 TSKUQ8WUA8 353 aa14.41□□□□□ -0.1
PTPN4-211ENST00000488279 A0A1B0GUT8 65 aa14.4□□□□□ -0.1
PTPN4-211ENST00000488279 HIGD1CA8MV81 97 aa14.4□□□□□ -0.1
PTPN4-211ENST00000488279 ZNF25P17030 456 aaPredicted RBP14.4□□□□□ -0.1
PTPN4-211ENST00000488279 SERTAD4-AS1Q5TG53 156 aa14.4□□□□□ -0.1
PTPN4-211ENST00000488279 BTF3L4Q96K17 158 aa14.4□□□□□ -0.1
PTPN4-211ENST00000488279 ST20Q9HBF5 79 aa14.4□□□□□ -0.1
PTPN4-211ENST00000488279 FAM231BA6NCW3 169 aa14.39□□□□□ -0.11
PTPN4-211ENST00000488279 ZNF727A8MUV8 499 aa14.39□□□□□ -0.11
PTPN4-211ENST00000488279 RPS10P46783 165 aaKnown RBP14.39□□□□□ -0.11
PTPN4-211ENST00000488279 TMEM101Q96IK0 257 aa14.39□□□□□ -0.11
PTPN4-211ENST00000488279 FAM210AQ96ND0 272 aa14.39□□□□□ -0.11
PTPN4-211ENST00000488279 TMEM191AQ9H0A3 160 aa14.39□□□□□ -0.11
PTPN4-211ENST00000488279 PKHD1L1Q86WI1 4243 aa14.39□□□□□ -0.11
PTPN4-211ENST00000488279 A0A087WYN8 130 aa14.38□□□□□ -0.11
PTPN4-211ENST00000488279 CHTF8P0CG12 524 aa14.38□□□□□ -0.11
PTPN4-211ENST00000488279 HNRNPA3P51991 378 aaKnown RBP14.38□□□□□ -0.11
PTPN4-211ENST00000488279 HIGD2BQ4VC39 106 aa14.38□□□□□ -0.11
PTPN4-211ENST00000488279 SPACA4Q8TDM5 124 aa14.38□□□□□ -0.11
PTPN4-211ENST00000488279 OSTCQ9NRP0 149 aa14.38□□□□□ -0.11
PTPN4-211ENST00000488279 GAS8-AS1O95177 125 aa14.37□□□□□ -0.11
PTPN4-211ENST00000488279 OR5A1Q8NGJ0 315 aa14.37□□□□□ -0.11
PTPN4-211ENST00000488279 TSHBP01222 138 aa14.36□□□□□ -0.11
PTPN4-211ENST00000488279 ESDP10768 282 aa14.36□□□□□ -0.11
PTPN4-211ENST00000488279 COX6A2Q02221 97 aa14.36□□□□□ -0.11
PTPN4-211ENST00000488279 SRP19P09132 144 aaKnown RBP14.35□□□□□ -0.11
PTPN4-211ENST00000488279 RAB4AP20338 218 aa14.35□□□□□ -0.11
PTPN4-211ENST00000488279 FOXI1Q12951 378 aa14.35□□□□□ -0.11
PTPN4-211ENST00000488279 MRAP2Q96G30 205 aa14.35□□□□□ -0.11
PTPN4-211ENST00000488279 TMEM242Q9NWH2 141 aa14.35□□□□□ -0.11
PTPN4-211ENST00000488279 GVQW2A0A096LPI5 108 aaPredicted RBP14.34□□□□□ -0.11
PTPN4-211ENST00000488279 XCL1P47992 114 aa14.34□□□□□ -0.11
PTPN4-211ENST00000488279 POLR2KP53803 58 aaKnown RBP14.34□□□□□ -0.11
PTPN4-211ENST00000488279 TRBV27A0A0K0K1C4 114 aa14.33□□□□□ -0.12
PTPN4-211ENST00000488279 LINC00959A0A1B0GUT2 108 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms