RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 EMP1P54849 157 aa10.06□□□□□ -0.8
CUX1-209ENST00000487284 ODF1Q14990 250 aa10.06□□□□□ -0.8
CUX1-209ENST00000487284 MAJINQ3KP22 176 aa10.06□□□□□ -0.8
CUX1-209ENST00000487284 SPATA45Q537H7 98 aa10.06□□□□□ -0.8
CUX1-209ENST00000487284 Q8NAQ8 132 aa10.06□□□□□ -0.8
CUX1-209ENST00000487284 DEFB4AO15263 64 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 PRSS1P07477 247 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 MIFP14174 115 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 DEFB104AQ8WTQ1 72 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 ZMAT4Q9H898 229 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 LYRM9A8MSI8 78 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 SLC25A29Q8N8R3 303 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 C20orf203Q8NBC4 194 aa10.05□□□□□ -0.8
CUX1-209ENST00000487284 TRBV7-3A0A075B6L6 115 aa10.04□□□□□ -0.8
CUX1-209ENST00000487284 TRAV12-1A0A0B4J245 112 aa10.04□□□□□ -0.8
CUX1-209ENST00000487284 TRBV6-4A0A1B0GX49 114 aa10.04□□□□□ -0.8
CUX1-209ENST00000487284 IGIPA6NJ69 53 aa10.04□□□□□ -0.8
CUX1-209ENST00000487284 DDTP30046 118 aa10.04□□□□□ -0.8
CUX1-209ENST00000487284 RPL39P62891 51 aaKnown RBP10.04□□□□□ -0.8
CUX1-209ENST00000487284 Q6ZN92 141 aa10.04□□□□□ -0.8
CUX1-209ENST00000487284 LINC00587B1AMM8 73 aa10.03□□□□□ -0.8
CUX1-209ENST00000487284 RPL36AP83881 106 aaKnown RBP10.03□□□□□ -0.8
CUX1-209ENST00000487284 FHL2Q14192 279 aa10.03□□□□□ -0.8
CUX1-209ENST00000487284 RPL36ALQ969Q0 106 aaKnown RBP10.03□□□□□ -0.8
CUX1-209ENST00000487284 TIMM17AQ99595 171 aa10.03□□□□□ -0.8
CUX1-209ENST00000487284 DKK2Q9UBU2 259 aa10.03□□□□□ -0.8
CUX1-209ENST00000487284 A0A087WX48 190 aa10.02□□□□□ -0.81
CUX1-209ENST00000487284 hDV102S1A0JD36 115 aa10.02□□□□□ -0.81
CUX1-209ENST00000487284 ZNRF2Q8NHG8 242 aa10.02□□□□□ -0.81
CUX1-209ENST00000487284 BAALCQ8WXS3 180 aa10.02□□□□□ -0.81
CUX1-209ENST00000487284 TMEM141Q96I45 108 aa10.02□□□□□ -0.81
CUX1-209ENST00000487284 STAB2Q8WWQ8 2551 aa10.02□□□□□ -0.81
CUX1-209ENST00000487284 TRGV4A0A0C4DH28 118 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 HSBP1L1C9JCN9 74 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 DEFB130BP0DP73 79 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 DEFB130AP0DP74 79 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 UBE2D3P61077 147 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 UBE2D2P62837 147 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 FAM222AQ5U5X8 452 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 IGLC3P0DOY3 106 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 COTL1Q14019 142 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 MIEN1Q9BRT3 115 aa10.01□□□□□ -0.81
CUX1-209ENST00000487284 DPM2O94777 84 aa10□□□□□ -0.81
CUX1-209ENST00000487284 PHLDA1Q8WV24 401 aaPredicted RBP10□□□□□ -0.81
CUX1-209ENST00000487284 CHCHD7Q9BUK0 85 aa10□□□□□ -0.81
CUX1-209ENST00000487284 MRPL35Q9NZE8 188 aaKnown RBP10□□□□□ -0.81
CUX1-209ENST00000487284 CELA1Q9UNI1 258 aa10□□□□□ -0.81
CUX1-209ENST00000487284 IGHV3-38A0A0C4DH36 116 aa9.99□□□□□ -0.81
CUX1-209ENST00000487284 A0A0J9YWU9 116 aa9.99□□□□□ -0.81
CUX1-209ENST00000487284 F8VRH5 84 aa9.99□□□□□ -0.81
CUX1-209ENST00000487284 IGKCP01834 107 aa9.99□□□□□ -0.81
CUX1-209ENST00000487284 DAZ4Q86SG3 579 aaKnown RBP9.99□□□□□ -0.81
CUX1-209ENST00000487284 C11orf68Q9H3H3 251 aaKnown RBP9.99□□□□□ -0.81
CUX1-209ENST00000487284 DAZ3Q9NR90 486 aaKnown RBP9.99□□□□□ -0.81
CUX1-209ENST00000487284 PYGO1Q9Y3Y4 419 aa9.99□□□□□ -0.81
CUX1-209ENST00000487284 GAGE12JA6NER3 117 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 LINC00694P0DN24 101 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 GAGE1Q13065 139 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 GAGE4Q13068 117 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 GAGE5Q13069 117 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 GAGE13Q4V321 117 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 PRADC1Q9BSG0 188 aa9.98□□□□□ -0.81
CUX1-209ENST00000487284 PRSS29PA6NIE9 313 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 NPSP0C0P6 89 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 PLNP26678 52 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 PMVKQ15126 192 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 UQCR10Q9UDW1 63 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 HHLA3Q9XRX5 114 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 CHTOPQ9Y3Y2 248 aaKnown RBP9.97□□□□□ -0.81
CUX1-209ENST00000487284 LOC100131303A0A0U1RQF7 123 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 NHLRC4P0CG21 123 aaPredicted RBP9.97□□□□□ -0.81
CUX1-209ENST00000487284 ANKRD39Q53RE8 183 aa9.97□□□□□ -0.81
CUX1-209ENST00000487284 IGLV4-3A0A075B6K6 122 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 SPART-AS1P0CW21 52 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 DAD1P61803 113 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 NTM-AS1Q6ZSK4 140 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 STPG4Q8N801 248 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 C14orf144Q96I85 54 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 CST9LQ9H4G1 147 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 SPANXA1Q9NS26 97 aa9.96□□□□□ -0.82
CUX1-209ENST00000487284 CRYBA4P53673 196 aa9.95□□□□□ -0.82
CUX1-209ENST00000487284 FAM104AQ969W3 186 aa9.95□□□□□ -0.82
CUX1-209ENST00000487284 TIMM21Q9BVV7 248 aa9.95□□□□□ -0.82
CUX1-209ENST00000487284 GTSF1LQ9H1H1 148 aa9.95□□□□□ -0.82
CUX1-209ENST00000487284 PRO0255Q9UI72 69 aa9.95□□□□□ -0.82
CUX1-209ENST00000487284 UBE2D4Q9Y2X8 147 aa9.95□□□□□ -0.82
CUX1-209ENST00000487284 IGLV4-69A0A075B6H9 119 aa9.94□□□□□ -0.82
CUX1-209ENST00000487284 TEX48A0A1B0GUV7 120 aa9.94□□□□□ -0.82
CUX1-209ENST00000487284 PAPPA-AS1Q5QFB9 102 aa9.94□□□□□ -0.82
CUX1-209ENST00000487284 OPRPNQ99935 248 aaPredicted RBP9.94□□□□□ -0.82
CUX1-209ENST00000487284 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.93□□□□□ -0.82
CUX1-209ENST00000487284 IGKV2-29A2NJV5 120 aaPredicted RBP9.93□□□□□ -0.82
CUX1-209ENST00000487284 ZC2HC1BQ5TFG8 222 aa9.93□□□□□ -0.82
CUX1-209ENST00000487284 TGP01266 2768 aa9.93□□□□□ -0.82
CUX1-209ENST00000487284 ATP5G1P05496 136 aa9.92□□□□□ -0.82
CUX1-209ENST00000487284 COX8AP10176 69 aa9.92□□□□□ -0.82
CUX1-209ENST00000487284 C12orf74Q32Q52 190 aa9.92□□□□□ -0.82
CUX1-209ENST00000487284 AMELXQ99217 191 aa9.92□□□□□ -0.82
CUX1-209ENST00000487284 SLC25A34Q6PIV7 304 aa9.92□□□□□ -0.82
CUX1-209ENST00000487284 C11orf86A6NJI1 115 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms