RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 BAGE3Q86Y29 109 aa5.75□□□□□ -1.49
USP4-210ENST00000483212 HIST3H2BBQ8N257 126 aa5.75□□□□□ -1.49
USP4-210ENST00000483212 ZNRF2Q8NHG8 242 aa5.75□□□□□ -1.49
USP4-210ENST00000483212 CHCHD1Q96BP2 118 aaKnown RBP5.75□□□□□ -1.49
USP4-210ENST00000483212 PRADC1Q9BSG0 188 aa5.75□□□□□ -1.49
USP4-210ENST00000483212 KRTAP4-11Q9BYQ6 195 aa5.75□□□□□ -1.49
USP4-210ENST00000483212 NXT2Q9NPJ8 142 aaKnown RBP5.75□□□□□ -1.49
USP4-210ENST00000483212 TNFRSF18Q9Y5U5 241 aa5.75□□□□□ -1.49
USP4-210ENST00000483212 PLECQ15149 4684 aaKnown RBP5.74□□□□□ -1.49
USP4-210ENST00000483212 TRAV26-1A0A087WT03 109 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 A0A0J9YY99 117 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 H3BNG1 76 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 VCYO14598 125 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 TCAPO15273 167 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 PAX4O43316 350 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 GYPEP15421 78 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 HTN3P15516 51 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 PMCHP20382 165 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 RPL36AP83881 106 aaKnown RBP5.74□□□□□ -1.49
USP4-210ENST00000483212 RNASEKQ6P5S7 137 aaKnown RBP5.74□□□□□ -1.49
USP4-210ENST00000483212 PRSS3P2Q8NHM4 247 aa5.74□□□□□ -1.49
USP4-210ENST00000483212 RPL36ALQ969Q0 106 aaKnown RBP5.74□□□□□ -1.49
USP4-210ENST00000483212 DEFB131BA0A096LNP1 70 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 A0A096LPF7 62 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 TRAV10A0A0B4J240 114 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 IGHV1-24A0A0C4DH33 117 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 IGHV3-38A0A0C4DH36 116 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 I3L3M4 83 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 K7EMI3 77 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 S100A6P06703 90 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 NTM-AS1Q6ZSK4 140 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 FA2HQ7L5A8 372 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 PHLDA1Q8WV24 401 aaPredicted RBP5.73□□□□□ -1.49
USP4-210ENST00000483212 AP5S1Q9NUS5 200 aa5.73□□□□□ -1.49
USP4-210ENST00000483212 HSBP1O75506 76 aa5.72□□□□□ -1.49
USP4-210ENST00000483212 LAGE3Q14657 143 aa5.72□□□□□ -1.49
USP4-210ENST00000483212 PMCHL1Q16048 86 aa5.72□□□□□ -1.49
USP4-210ENST00000483212 DAZ4Q86SG3 579 aaKnown RBP5.72□□□□□ -1.49
USP4-210ENST00000483212 FAM19A2Q8N3H0 131 aa5.72□□□□□ -1.49
USP4-210ENST00000483212 DEFB104AQ8WTQ1 72 aa5.72□□□□□ -1.49
USP4-210ENST00000483212 CHCHD7Q9BUK0 85 aa5.72□□□□□ -1.49
USP4-210ENST00000483212 DAZ3Q9NR90 486 aaKnown RBP5.72□□□□□ -1.49
USP4-210ENST00000483212 FCER1GP30273 86 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 ORMDL2Q53FV1 153 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 PDZD11Q5EBL8 140 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 ATP6V0E2Q8NHE4 81 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 PACRGQ96M98 296 aaPredicted RBP5.71□□□□□ -1.5
USP4-210ENST00000483212 KIR2DL4Q99706 377 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 HIST1H2BLQ99880 126 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 GTSF1LQ9H1H1 148 aa5.71□□□□□ -1.5
USP4-210ENST00000483212 HBDP02042 147 aa5.7□□□□□ -1.5
USP4-210ENST00000483212 AMTP48728 403 aa5.7□□□□□ -1.5
USP4-210ENST00000483212 COTL1Q14019 142 aa5.7□□□□□ -1.5
USP4-210ENST00000483212 MRPL23Q16540 153 aaKnown RBP5.7□□□□□ -1.5
USP4-210ENST00000483212 C20orf203Q8NBC4 194 aa5.7□□□□□ -1.5
USP4-210ENST00000483212 ICOSQ9Y6W8 199 aa5.7□□□□□ -1.5
USP4-210ENST00000483212 CSMD3Q7Z407 3707 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 TRBV6-8A0A0A6YYG3 113 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 LOC105371267A0A1B0GV96 52 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 NUDT3O95989 172 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 TIRAPP58753 221 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 C2orf66Q6UXQ4 117 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 LINC00173Q6ZV60 143 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 FAM104AQ969W3 186 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 TOMM6Q96B49 74 aa5.69□□□□□ -1.5
USP4-210ENST00000483212 IGIPA6NJ69 53 aa5.68□□□□□ -1.5
USP4-210ENST00000483212 RPL39P62891 51 aaKnown RBP5.68□□□□□ -1.5
USP4-210ENST00000483212 TMEM97Q5BJF2 176 aa5.68□□□□□ -1.5
USP4-210ENST00000483212 LYPD5Q6UWN5 251 aa5.68□□□□□ -1.5
USP4-210ENST00000483212 SH2D6Q7Z4S9 175 aa5.68□□□□□ -1.5
USP4-210ENST00000483212 TMEM18Q96B42 140 aa5.68□□□□□ -1.5
USP4-210ENST00000483212 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.67□□□□□ -1.5
USP4-210ENST00000483212 IGKV2-29A2NJV5 120 aaPredicted RBP5.67□□□□□ -1.5
USP4-210ENST00000483212 FABP4P15090 132 aa5.67□□□□□ -1.5
USP4-210ENST00000483212 BTF3P20290 206 aaKnown RBP5.67□□□□□ -1.5
USP4-210ENST00000483212 S100A2P29034 98 aa5.67□□□□□ -1.5
USP4-210ENST00000483212 CEMP1Q6PRD7 247 aaPredicted RBP5.67□□□□□ -1.5
USP4-210ENST00000483212 C15orf53Q8NAA6 179 aa5.67□□□□□ -1.5
USP4-210ENST00000483212 CYSLTR1Q9Y271 337 aa5.67□□□□□ -1.5
USP4-210ENST00000483212 UBE2D4Q9Y2X8 147 aa5.67□□□□□ -1.5
USP4-210ENST00000483212 DNAH1Q9P2D7 4330 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 TRBV25-1A0A075B6N4 114 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 LEPROTL1O95214 131 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 ESRGQ1W209 222 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 LELP1Q5T871 98 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 MRPL52Q86TS9 123 aaKnown RBP5.66□□□□□ -1.5
USP4-210ENST00000483212 TIMM17AQ99595 171 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 TMEM243Q9BU79 118 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 TIMM21Q9BVV7 248 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 APLNQ9ULZ1 77 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 PYGO1Q9Y3Y4 419 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 VPS13DQ5THJ4 4388 aa5.66□□□□□ -1.5
USP4-210ENST00000483212 LINC01549A6NIU2 74 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 IGLL5B9A064 214 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 H7C423 109 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 C3orf79P0CE67 100 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 G0S2P27469 103 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 ERASQ7Z444 233 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 SPATA12Q7Z6I5 190 aa5.65□□□□□ -1.5
USP4-210ENST00000483212 Q8N976 141 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms