RNA–Protein interactions for RNA: ENST00000481173.1

CCNL1-223, Transcript of cyclin L1, human

TSL 2

Gene CCNL1, Length 571 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-223	ENST00000481173	MGP	P08493	103 aa		0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	TRAPPC2	P0DI81	140 aa		0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	TRAPPC2B	P0DI82	140 aa		0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	AP4S1	Q9Y587	144 aa		0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	XIRP1	Q702N8	1843 aa	Known RBP	0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	NAV3	Q8IVL0	2385 aa		0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	ANK1	P16157	1881 aa		0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	HELZ	P42694	1942 aa	Known RBP	0.28	□□□□□ -2.36
CCNL1-223	ENST00000481173	MBD5	Q9P267	1494 aa		0.28	□□□□□ -2.37
CCNL1-223	ENST00000481173	MEGF8	Q7Z7M0	2845 aa		0.28	□□□□□ -2.37
CCNL1-223	ENST00000481173	CHD9	Q3L8U1	2897 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	DLEC1	Q9Y238	1755 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	PLXNA4	Q9HCM2	1894 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	PTPRD	P23468	1912 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	EML5	Q05BV3	1969 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	LOC100130705	A0A1B0GUX0	176 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	TMEM218	A2RU14	115 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	ZNF815P	A8K554	130 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	HMGN4	O00479	90 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	SFT2D2	O95562	160 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	HAMP	P81172	84 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173		Q5BKY6	102 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	SSBP3-AS1	Q7Z2R9	100 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	KRTAP19-3	Q7Z4W3	81 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	C12orf57	Q99622	126 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	CGREF1	Q99674	301 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	VAMP8	Q9BV40	100 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	CNFN	Q9BYD5	112 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	DPH3P1	Q9H4G8	78 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	NXT2	Q9NPJ8	142 aa	Known RBP	0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	MANBAL	Q9NQG1	85 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	NDUFA4L2	Q9NRX3	87 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	MYOM2	P54296	1465 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	BCL9L	Q86UU0	1499 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	MAPKBP1	O60336	1514 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	FAM135A	Q9P2D6	1515 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	UNC13B	O14795	1591 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	EIF4G3	O43432	1585 aa	Known RBP	0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	CASZ1	Q86V15	1759 aa		0.27	□□□□□ -2.37
CCNL1-223	ENST00000481173	ZFC3H1	O60293	1989 aa	Known RBP	0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	CASP8AP2	Q9UKL3	1982 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	ABCA4	P78363	2273 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	TRAV22	A0A0B4J277	110 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	IGLC7	A0M8Q6	106 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	CRYM-AS1	A6NIL9	109 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	LINC00587	B1AMM8	73 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	TMEM262	E9PQX1	116 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	NDUFC1	O43677	76 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	CFD	P00746	253 aa	Predicted RBP	0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	LINC00032	P0C843	101 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	SNCA	P37840	140 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	UBA52	P62987	128 aa	Known RBP	0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	HSD52	Q0P140	79 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	PIGY	Q3MUY2	71 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	FAM167A-AS1	Q96KT0	104 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	PRO1854	Q9UHT4	67 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	PRO0255	Q9UI72	69 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	LINC01558	Q9Y6Z2	57 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	ARL2-SNX15	V9GYD0	113 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	C10orf71	Q711Q0	1435 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	ZNF142	P52746	1687 aa	Predicted RBP	0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	CIT	O14578	2027 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	NIN	Q8N4C6	2090 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	SPTB	P11277	2137 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	KIAA0100	Q14667	2235 aa	Known RBP	0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	ZFYVE26	Q68DK2	2539 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	ABCA12	Q86UK0	2595 aa		0.26	□□□□□ -2.37
CCNL1-223	ENST00000481173	FANCM	Q8IYD8	2048 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	MYH1	P12882	1939 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	BCORL1	Q5H9F3	1711 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	ZMYM4	Q5VZL5	1548 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	MRC1	P22897	1456 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	NCOA3	Q9Y6Q9	1424 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173		A0A1B0GWA3	101 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	ATP6V1G2-DDX39B	F2Z307	99 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	PRH1	P02810	166 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	SAA2	P0DJI9	122 aa	Predicted RBP	0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173		Q6JHZ5	121 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	ACBD7	Q8N6N7	88 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	TMEM263	Q8WUH6	116 aa	Known RBP	0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	TSLP	Q969D9	159 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	SMR3A	Q99954	134 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	PRO1933	Q9H354	126 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	POLQ	O75417	2590 aa		0.25	□□□□□ -2.37
CCNL1-223	ENST00000481173	GOLGA3	Q08378	1498 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	SCAPER	Q9BY12	1400 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	TRAV30	A0A087WSZ9	112 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173		G3V318	75 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173		M0R3E3	92 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	IGLC1	P0CG04	106 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	SEC11A	P67812	179 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173		Q0VG73	95 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	ESPL1	Q14674	2120 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	KRTAP21-1	Q3LI58	79 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173		Q8IZM0	81 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	FDCSP	Q8NFU4	85 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	CDC42SE2	Q9NRR3	84 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	CDK5RAP2	Q96SN8	1893 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	UNC79	Q9P2D8	2635 aa		0.24	□□□□□ -2.37
CCNL1-223	ENST00000481173	RBBP6	Q7Z6E9	1792 aa	Known RBP	0.24	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms