RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 ICOSQ9Y6W8 199 aa8.41□□□□□ -1.06
PTPRF-213ENST00000481019 TRBV6-4A0A1B0GX49 114 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 LINC01549A6NIU2 74 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 M0QY20 66 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 RTL8CO15255 209 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 HSBP1O75506 76 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 ESDP10768 282 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 SNRPEP62304 92 aaKnown RBP8.4□□□□□ -1.06
PTPRF-213ENST00000481019 NIT1Q86X76 327 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 SLC25A29Q8N8R3 303 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 KIR2DL4Q99706 377 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 PRADC1Q9BSG0 188 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 AP5S1Q9NUS5 200 aa8.4□□□□□ -1.06
PTPRF-213ENST00000481019 MRPS16Q9Y3D3 137 aaKnown RBP8.4□□□□□ -1.06
PTPRF-213ENST00000481019 NCR2O95944 276 aa8.39□□□□□ -1.07
PTPRF-213ENST00000481019 NPYP01303 97 aa8.39□□□□□ -1.07
PTPRF-213ENST00000481019 LYPD5Q6UWN5 251 aa8.39□□□□□ -1.07
PTPRF-213ENST00000481019 Q8N8P6 123 aa8.39□□□□□ -1.07
PTPRF-213ENST00000481019 NRACQ8N912 160 aa8.39□□□□□ -1.07
PTPRF-213ENST00000481019 TMEM18Q96B42 140 aa8.39□□□□□ -1.07
PTPRF-213ENST00000481019 PACRGQ96M98 296 aaPredicted RBP8.39□□□□□ -1.07
PTPRF-213ENST00000481019 TRAV26-2A0A0B4J265 109 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 NBDYA0A0U1RRE5 68 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 LOC389332A0A1B0GUA5 103 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 SMKR1H3BMG3 65 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 RPL36AP83881 106 aaKnown RBP8.38□□□□□ -1.07
PTPRF-213ENST00000481019 RHOHQ15669 191 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 ORMDL2Q53FV1 153 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 RNASEKQ6P5S7 137 aaKnown RBP8.38□□□□□ -1.07
PTPRF-213ENST00000481019 RPL36ALQ969Q0 106 aaKnown RBP8.38□□□□□ -1.07
PTPRF-213ENST00000481019 UPK3BQ9BT76 320 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 Q9H8V8 135 aa8.38□□□□□ -1.07
PTPRF-213ENST00000481019 SERF1AO75920 110 aa8.37□□□□□ -1.07
PTPRF-213ENST00000481019 MRPL23Q16540 153 aaKnown RBP8.37□□□□□ -1.07
PTPRF-213ENST00000481019 SMIM2Q9BVW6 85 aa8.37□□□□□ -1.07
PTPRF-213ENST00000481019 TRBV7-3A0A075B6L6 115 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 TRBV27A0A0K0K1C4 114 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 SDHAF1A6NFY7 115 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 I3L3M4 83 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 IFI27P40305 119 aaPredicted RBP8.36□□□□□ -1.07
PTPRF-213ENST00000481019 POLR2KP53803 58 aaKnown RBP8.36□□□□□ -1.07
PTPRF-213ENST00000481019 LAGE3Q14657 143 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 IQCJQ1A5X6 159 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 NEGR1Q7Z3B1 354 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 DAZ4Q86SG3 579 aaKnown RBP8.36□□□□□ -1.07
PTPRF-213ENST00000481019 TMEM70Q9BUB7 260 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 DAZ3Q9NR90 486 aaKnown RBP8.36□□□□□ -1.07
PTPRF-213ENST00000481019 LRP1BQ9NZR2 4599 aa8.36□□□□□ -1.07
PTPRF-213ENST00000481019 LINC01546A6NGU7 62 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 FCER1GP30273 86 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 TMEM97Q5BJF2 176 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 SH2D6Q7Z4S9 175 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 HIST3H2BBQ8N257 126 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 KIAA1109Q2LD37 5005 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 HERC2O95714 4834 aa8.35□□□□□ -1.07
PTPRF-213ENST00000481019 A0A1B0GVY2 172 aa8.34□□□□□ -1.07
PTPRF-213ENST00000481019 LINC00694P0DN24 101 aa8.34□□□□□ -1.07
PTPRF-213ENST00000481019 AMTP48728 403 aa8.34□□□□□ -1.07
PTPRF-213ENST00000481019 SMAGPQ0VAQ4 97 aa8.34□□□□□ -1.07
PTPRF-213ENST00000481019 WFDC10BQ8IUB3 73 aa8.34□□□□□ -1.07
PTPRF-213ENST00000481019 RPL39LQ96EH5 51 aaKnown RBP8.34□□□□□ -1.07
PTPRF-213ENST00000481019 HSPB8Q9UJY1 196 aa8.34□□□□□ -1.07
PTPRF-213ENST00000481019 GAGE12JA6NER3 117 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 GAGE1Q13065 139 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 GAGE4Q13068 117 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 GAGE5Q13069 117 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 GAGE13Q4V321 117 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 C1orf134Q5TEV5 83 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 NEXN-AS1Q8NBZ9 246 aa8.33□□□□□ -1.08
PTPRF-213ENST00000481019 GAS8-AS1O95177 125 aa8.32□□□□□ -1.08
PTPRF-213ENST00000481019 HBDP02042 147 aa8.32□□□□□ -1.08
PTPRF-213ENST00000481019 AKR1D1P51857 326 aa8.32□□□□□ -1.08
PTPRF-213ENST00000481019 COTL1Q14019 142 aa8.32□□□□□ -1.08
PTPRF-213ENST00000481019 PRSS29PA6NIE9 313 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 SIVA1O15304 175 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 LEPROTL1O95214 131 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 FABP4P15090 132 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 PDZD11Q5EBL8 140 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 C6orf223Q8N319 242 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 HIST1H2BLQ99880 126 aa8.31□□□□□ -1.08
PTPRF-213ENST00000481019 APOBP04114 4563 aaKnown RBP8.3□□□□□ -1.08
PTPRF-213ENST00000481019 RYR1P21817 5038 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 ATP5LO75964 103 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 TNP2Q05952 138 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 LINC00336Q6ZUF6 198 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 Q8N3U1 123 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 ATP6V0E2Q8NHE4 81 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 CYSLTR1Q9Y271 337 aa8.3□□□□□ -1.08
PTPRF-213ENST00000481019 IGHV1-24A0A0C4DH33 117 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 NUPR1O60356 82 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 BTF3P20290 206 aaKnown RBP8.29□□□□□ -1.08
PTPRF-213ENST00000481019 TIRAPP58753 221 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 LINC00310P59036 64 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 UBE2D3P61077 147 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 UBE2D2P62837 147 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 FAM19A2Q8N3H0 131 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 URB1-AS1Q96HZ7 61 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 MAP1LC3CQ9BXW4 147 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 GTSF1LQ9H1H1 148 aa8.29□□□□□ -1.08
PTPRF-213ENST00000481019 PAPPA-AS1Q5QFB9 102 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms