RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 ATP5G1P05496 136 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 NPSP0C0P6 89 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 LINC00694P0DN24 101 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 NDUFA6P56556 154 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 SUMO2P61956 95 aaKnown RBP4.66□□□□□ -1.66
USP48-208ENST00000479177 RHOHQ15669 191 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 SLC25A29Q8N8R3 303 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 NEXN-AS1Q8NBZ9 246 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 URB1-AS1Q96HZ7 61 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 C20orf78Q9BR46 151 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 TMEM70Q9BUB7 260 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 SMIM2Q9BVW6 85 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 MAP1LC3AQ9H492 121 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 NIT2Q9NQR4 276 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 Q9UF83 564 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 DNAH7Q8WXX0 4024 aa4.66□□□□□ -1.66
USP48-208ENST00000479177 DYNC2H1Q8NCM8 4307 aaKnown RBP4.65□□□□□ -1.66
USP48-208ENST00000479177 SDHAF1A6NFY7 115 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 LINC01546A6NGU7 62 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 BTF3P20290 206 aaKnown RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 PMCHP20382 165 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 IFI27P40305 119 aaPredicted RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 CRYBA4P53673 196 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 POLR2KP53803 58 aaKnown RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 NANOS2P60321 138 aaKnown RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 RNASEKQ6P5S7 137 aaKnown RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 Q6ZTC4 211 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 NEGR1Q7Z3B1 354 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 BAGE3Q86Y29 109 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 Q8N8P6 123 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 DNAJC30Q96LL9 226 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 ST20Q9HBF5 79 aa4.65□□□□□ -1.67
USP48-208ENST00000479177 NXT2Q9NPJ8 142 aaKnown RBP4.65□□□□□ -1.67
USP48-208ENST00000479177 TRBV27A0A0K0K1C4 114 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 LOC100131303A0A0U1RQF7 123 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 LOC389332A0A1B0GUA5 103 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 C5orf52A6NGY3 159 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 F5H768 121 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 NUPR1O60356 82 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 S100A6P06703 90 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 ESDP10768 282 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 HTN3P15516 51 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 TIRAPP58753 221 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 RPL36AP83881 106 aaKnown RBP4.64□□□□□ -1.67
USP48-208ENST00000479177 FA2HQ7L5A8 372 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 PRSS3P2Q8NHM4 247 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 C11orf45Q8TAV5 145 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 RPL36ALQ969Q0 106 aaKnown RBP4.64□□□□□ -1.67
USP48-208ENST00000479177 CHCHD1Q96BP2 118 aaKnown RBP4.64□□□□□ -1.67
USP48-208ENST00000479177 VSIG2Q96IQ7 327 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 PRADC1Q9BSG0 188 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 PRO0255Q9UI72 69 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 HHLA3Q9XRX5 114 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 TENM2Q9NT68 2774 aa4.64□□□□□ -1.67
USP48-208ENST00000479177 TRBV7-3A0A075B6L6 115 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 TRAV26-1A0A087WT03 109 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 A0A0J9YY99 117 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 GAGE12JA6NER3 117 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 VCYO14598 125 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 TSHBP01222 138 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 UBE2D3P61077 147 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 SNRPEP62304 92 aaKnown RBP4.63□□□□□ -1.67
USP48-208ENST00000479177 UBE2D2P62837 147 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 GAGE1Q13065 139 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 GAGE4Q13068 117 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 GAGE5Q13069 117 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 NIT1Q86X76 327 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 HIST3H2BBQ8N257 126 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 ZNRF2Q8NHG8 242 aa4.63□□□□□ -1.67
USP48-208ENST00000479177 A0A096LNJ9 63 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 DEFB131BA0A096LNP1 70 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 TRAV10A0A0B4J240 114 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 IGHV1-24A0A0C4DH33 117 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 IFITM10A6NMD0 228 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 I3L3M4 83 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 K7EMI3 77 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 TCAPO15273 167 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 HSBP1O75506 76 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 LINC00614P0C842 121 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 LAGE3Q14657 143 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 PDZD11Q5EBL8 140 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 PHLDA1Q8WV24 401 aaPredicted RBP4.62□□□□□ -1.67
USP48-208ENST00000479177 KIR2DL4Q99706 377 aa4.62□□□□□ -1.67
USP48-208ENST00000479177 IGHV3-38A0A0C4DH36 116 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 H3BNG1 76 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 AMTP48728 403 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 COTL1Q14019 142 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 PMCHL1Q16048 86 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 ORMDL2Q53FV1 153 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 DAZ4Q86SG3 579 aaKnown RBP4.61□□□□□ -1.67
USP48-208ENST00000479177 FAM19A2Q8N3H0 131 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 DEFB104AQ8WTQ1 72 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 DAZ3Q9NR90 486 aaKnown RBP4.61□□□□□ -1.67
USP48-208ENST00000479177 ICOSQ9Y6W8 199 aa4.61□□□□□ -1.67
USP48-208ENST00000479177 A0A096LPF7 62 aa4.6□□□□□ -1.67
USP48-208ENST00000479177 HBDP02042 147 aa4.6□□□□□ -1.67
USP48-208ENST00000479177 FCER1GP30273 86 aa4.6□□□□□ -1.67
USP48-208ENST00000479177 NTM-AS1Q6ZSK4 140 aa4.6□□□□□ -1.67
USP48-208ENST00000479177 ATP6V0E2Q8NHE4 81 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms