RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 ODF3Q96PU9 254 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 CST11Q9H112 138 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 XAGE1AQ9HD64 81 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 NXT2Q9NPJ8 142 aaKnown RBP0.91□□□□□ -2.26
VPS50-213ENST00000477572 HIGD1BQ9P298 99 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 NDUFA12Q9UI09 145 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 RABAC1Q9UI14 185 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 TSC2P49815 1807 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 ZNF236Q9UL36 1845 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 C1orf167Q5SNV9 1468 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 CDK12Q9NYV4 1490 aaPredicted RBP0.91□□□□□ -2.26
VPS50-213ENST00000477572 ANKRD36A6QL64 1941 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 SPTBP11277 2137 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 ZGRF1Q86YA3 2104 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 HEATR1Q9H583 2144 aaKnown RBP0.91□□□□□ -2.26
VPS50-213ENST00000477572 COL4A6Q14031 1691 aa0.91□□□□□ -2.26
VPS50-213ENST00000477572 KIAA0100Q14667 2235 aaKnown RBP0.91□□□□□ -2.26
VPS50-213ENST00000477572 TOP2BQ02880 1626 aa0.9□□□□□ -2.26
VPS50-213ENST00000477572 CDC42BPAQ5VT25 1732 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 CRYBG1Q9Y4K1 1723 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 IGKV1D-42A0A075B6H8 117 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 TRGV2A0A075B6R0 118 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 A0A087WWC5 75 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 IGHV3-15A0A0B4J1V0 119 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 TRAV17A0A0B4J275 112 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 hDV103S1A0JD37 113 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 HMSDA8MTL9 139 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 UMAD1C9J7I0 102 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 C5orf67F2Z3F1 127 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 CCL16O15467 120 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 CLPSP04118 112 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 TFF1P04155 84 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 PIPP12273 146 aaPredicted RBP0.9□□□□□ -2.27
VPS50-213ENST00000477572 EFNA4P52798 201 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 ROMO1P60602 79 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 GNG11P61952 73 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 UBE2G1P62253 170 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 LSM3P62310 102 aaKnown RBP0.9□□□□□ -2.27
VPS50-213ENST00000477572 PMCHL1Q16048 86 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 MIAQ16674 131 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 Q1T7F1 81 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 C1orf134Q5TEV5 83 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 FAM27BQ5VT28 67 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 CFAP126Q5VTH2 177 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 LYPD5Q6UWN5 251 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 ZCCHC23Q6ZST2 131 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 COMMD6Q7Z4G1 85 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 LINC00269Q8N2A0 174 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 SERP2Q8N6R1 65 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 TRGV9Q99603 122 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 PTPRMP28827 1452 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 MYOM1P52179 1685 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 UBR3Q6ZT12 1888 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 ZFHX3Q15911 3703 aa0.9□□□□□ -2.27
VPS50-213ENST00000477572 ABCC1P33527 1531 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ASXL1Q8IXJ9 1541 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 SYCP2Q9BX26 1530 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 KIAA0556O60303 1618 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 MYO7BQ6PIF6 2116 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 RP1P56715 2156 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ZNF142P52746 1687 aaPredicted RBP0.89□□□□□ -2.27
VPS50-213ENST00000477572 PLCH1Q4KWH8 1693 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 A0A0G2JND7 137 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 CRYM-AS1A6NIL9 109 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 LYRM1O43325 122 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 CRPP02741 224 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 MSMBP08118 114 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ASAH2BP0C7U1 165 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 XCL1P47992 114 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ERHP84090 104 aaKnown RBP0.89□□□□□ -2.27
VPS50-213ENST00000477572 NNATQ16517 81 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ESRGQ1W209 222 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 MPV17LQ2QL34 196 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ASB16-AS1Q495Z4 193 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 SPANXN1Q5VSR9 72 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 RPL7L1Q6DKI1 246 aaKnown RBP0.89□□□□□ -2.27
VPS50-213ENST00000477572 XAF1Q6GPH4 301 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 Q6ZQT0 140 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 FAM223AQ8IWN6 122 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 SPTSSBQ8NFR3 76 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 SPACA4Q8TDM5 124 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 DYNLRB2Q8TF09 96 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 MGST2Q99735 147 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 MRPL35Q9NZE8 188 aaKnown RBP0.89□□□□□ -2.27
VPS50-213ENST00000477572 PRO2289Q9P1D8 64 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 FREM3P0C091 2139 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 SIP14410 1827 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 ARFGEF3Q5TH69 2177 aa0.89□□□□□ -2.27
VPS50-213ENST00000477572 UNC13BO14795 1591 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 TET1Q8NFU7 2136 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 IQSEC2Q5JU85 1478 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 LRRC9Q6ZRR7 1453 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 TRAV7A0A075B6U4 112 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 TRAV13-2A0A0B4J235 113 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 KANTRA0A1W2PQU2 76 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 HCG22E2RYF7 251 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 F2Z2F3 143 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 H7BZZ5 65 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 H7C2G1 150 aa0.88□□□□□ -2.27
VPS50-213ENST00000477572 SMIM13P0DJ93 91 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms