RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 CRYGBP07316 175 aa3.76□□□□□ -1.81
CCDC39-204ENST00000476379 LGALS1P09382 135 aaKnown RBP3.76□□□□□ -1.81
CCDC39-204ENST00000476379 C5orf56Q8N8D9 126 aa3.76□□□□□ -1.81
CCDC39-204ENST00000476379 TIMM21Q9BVV7 248 aa3.76□□□□□ -1.81
CCDC39-204ENST00000476379 TRBV7-9A0A0J9YWB2 115 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 LINC00158P58513 81 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 HERV-K104P63124 156 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 GAGE6Q13070 117 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 DEFB113Q30KQ7 82 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 C2orf82Q6UX34 121 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 MUSTN1Q8IVN3 82 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 STHQ8IWL8 128 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 MINOS1-NBL1R4GNA1 71 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 VCYO14598 125 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 PRIMA1Q86XR5 153 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 PKIGQ9Y2B9 76 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 OVOL1O14753 267 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 GHRHP01286 108 aa3.75□□□□□ -1.81
CCDC39-204ENST00000476379 A0A0J9YY99 117 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TINCRA0A1B0GVN0 87 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 M0R2P5 195 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 COX6CP09669 75 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 PMVKQ15126 192 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 C10orf126Q8N4M7 172 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 CLUHP3Q96NS8 147 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 NDUFA12Q9UI09 145 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TRAV26-1A0A087WT03 109 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TRGV4A0A0C4DH28 118 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 IGHV7-4-1A0A0J9YVY3 117 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 IGLC6P0CF74 106 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 CRIP2P52943 208 aaPredicted RBP3.74□□□□□ -1.81
CCDC39-204ENST00000476379 LMO4P61968 165 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 C5orf38Q86SI9 138 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TEX29Q8N6K0 151 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 ZFAND3Q9H8U3 227 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 IGHG4P01861 327 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 PRB2P02812 416 aaPredicted RBP3.74□□□□□ -1.81
CCDC39-204ENST00000476379 FOXI2Q6ZQN5 318 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 RNF5Q99942 180 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 NOP10Q9NPE3 64 aaKnown RBP3.74□□□□□ -1.81
CCDC39-204ENST00000476379 IGHV1OR15-1A0A075B7D0 117 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TRAV12-1A0A0B4J245 112 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TEX49A0A1B0GTD5 131 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 PAX4O43316 350 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 SLC25A20O43772 301 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 TCL1BO95988 128 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 ANKRD29Q8N6D5 301 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 NPBQ8NG41 125 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 SIRPDQ9H106 197 aa3.74□□□□□ -1.81
CCDC39-204ENST00000476379 IGHV4-4A0A075B6R2 117 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 LY6LH3BQJ8 138 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 ZNF493Q6ZR52 646 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 TMEM61Q8N0U2 210 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 Q9HAA7 133 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 B4DSR2 109 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 C11orf71Q6IPW1 123 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 ZFAND2AQ8N6M9 145 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 LINC00526Q96FQ7 95 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 SMPXQ9UHP9 88 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 HHLA3Q9XRX5 114 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 SCGB1A1P11684 91 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 GAGE2BQ13066 116 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 GAGE2EQ4V326 116 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 GAGE2AQ6NT46 116 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 Q9H8V8 135 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 LINC00574Q9H8X3 128 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 GAGE2DQ9UEU5 116 aa3.73□□□□□ -1.81
CCDC39-204ENST00000476379 TRAV8-4A0A0B4J246 113 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 G3V4G9 280 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 MRPS12O15235 138 aaKnown RBP3.72□□□□□ -1.81
CCDC39-204ENST00000476379 LY6G6DO95868 133 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 TSPEAR-AS2P59090 65 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 FBXL19-AS1Q494R0 122 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 C10orf105Q8TEF2 133 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 PRO1854Q9UHT4 67 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 U3KQE9 123 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 CRLF1O75462 422 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 DNAL4O96015 105 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 RNASE3P12724 160 aaKnown RBP3.72□□□□□ -1.81
CCDC39-204ENST00000476379 XCL1P47992 114 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 Q6ZUT4 128 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 NRACQ8N912 160 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 ODF3BA8MYP8 253 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 NDUFA4O00483 81 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 ATP5G1P05496 136 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 HIST1H4AP62805 103 aaKnown RBP3.72□□□□□ -1.81
CCDC39-204ENST00000476379 PIK3CD-AS1Q5SR53 167 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 CARD19Q96LW7 228 aa3.72□□□□□ -1.81
CCDC39-204ENST00000476379 CIRBPQ14011 172 aaKnown RBP3.71□□□□□ -1.82
CCDC39-204ENST00000476379 TMEM190Q8WZ59 177 aa3.71□□□□□ -1.82
CCDC39-204ENST00000476379 LOC100131303A0A0U1RQF7 123 aa3.71□□□□□ -1.82
CCDC39-204ENST00000476379 TENM2Q9NT68 2774 aa3.71□□□□□ -1.82
CCDC39-204ENST00000476379 ZFAND6Q6FIF0 208 aa3.71□□□□□ -1.82
CCDC39-204ENST00000476379 FAM223BA6NKX1 122 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 I3L3M4 83 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 TNFRSF13BO14836 293 aaPredicted RBP3.7□□□□□ -1.82
CCDC39-204ENST00000476379 FAM223AQ8IWN6 122 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 C15orf53Q8NAA6 179 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 LY6G5BQ8NDX9 201 aa3.7□□□□□ -1.82
CCDC39-204ENST00000476379 RNF183Q96D59 192 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms