RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PRO0255Q9UI72 69 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 WNK3Q9BYP7 1800 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 KDM3BQ7LBC6 1761 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 A0A0D9SFI3 127 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 FAM25AB3EWG3 89 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 FAM25CB3EWG5 89 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 FAM25GB3EWG6 89 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 GNG7O60262 68 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 SELENOWP63302 87 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 S100A12P80511 92 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 C10orf128Q5T292 105 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 C12orf73Q69YU5 71 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 Q6AWC8 147 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 AQP10Q96PS8 301 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 SNRNP25Q9BV90 132 aaKnown RBP-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 SERP1Q9Y6X1 66 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 R4GMQ9 66 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 PLXNB2O15031 1838 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 DOCK2Q92608 1830 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 ZNF236Q9UL36 1845 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 NHSL1Q5SYE7 1610 aa-0.09□□□□□ -2.42
CCDC88A-212ENST00000474059 COL7A1Q02388 2944 aa-0.1□□□□□ -2.42
CCDC88A-212ENST00000474059 CELSR1Q9NYQ6 3014 aa-0.1□□□□□ -2.42
CCDC88A-212ENST00000474059 MYH7P12883 1935 aa-0.1□□□□□ -2.43
CCDC88A-212ENST00000474059 PIGBOS1A0A0B4J2F0 54 aa-0.1□□□□□ -2.43
CCDC88A-212ENST00000474059 CFDP00746 253 aaPredicted RBP-0.1□□□□□ -2.43
CCDC88A-212ENST00000474059 FAM107BQ9H098 131 aa-0.1□□□□□ -2.43
CCDC88A-212ENST00000474059 MBD5Q9P267 1494 aa-0.1□□□□□ -2.43
CCDC88A-212ENST00000474059 PPIP5K1Q6PFW1 1433 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 LRP6O75581 1613 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 LAMC1P11047 1609 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 M0R135 149 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 MEIG1Q5JSS6 88 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 TTC9CQ8N5M4 171 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 LENEPQ9Y5L5 61 aa-0.11□□□□□ -2.43
CCDC88A-212ENST00000474059 LRRC37A2A6NM11 1700 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 CHD9Q3L8U1 2897 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 CTXND1A0A1B0GTU2 59 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 M0R3E3 92 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 SPAG11BQ08648 103 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 SPAG11AQ6PDA7 123 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 TSC22D3Q99576 134 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 NAA60Q9H7X0 242 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 CACNA1CQ13936 2221 aa-0.12□□□□□ -2.43
CCDC88A-212ENST00000474059 HMCN2Q8NDA2 5059 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 KIF21AQ7Z4S6 1674 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 TRAV22A0A0B4J277 110 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 WFDC2Q14508 124 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 SMIM4Q8WVI0 70 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 V9GYH0 126 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 IGSF10Q6WRI0 2623 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 HIVEP3Q5T1R4 2406 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 F8P00451 2351 aa-0.13□□□□□ -2.43
CCDC88A-212ENST00000474059 UNC79Q9P2D8 2635 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 ASXL3Q9C0F0 2248 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 MIF4GDA9UHW6 222 aaKnown RBP-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 C10orf142B7Z368 130 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 BCE1O60756 84 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 HMGN1P05114 100 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 HAMPP81172 84 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 AMELXQ99217 191 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 SPCS1Q9Y6A9 102 aa-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 PPRC1Q5VV67 1664 aaKnown RBP-0.14□□□□□ -2.43
CCDC88A-212ENST00000474059 AHCTF1Q8WYP5 2266 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 SHROOM2Q13796 1616 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 LOC100130705A0A1B0GUX0 176 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 K7EP13 123 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 BTG2P78543 158 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 Q56UQ5 140 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 CPSF1Q10570 1443 aaKnown RBP-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 RIMS1Q86UR5 1692 aaKnown RBP-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 QRICH2Q9H0J4 1663 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 ERCC6L2Q5T890 1561 aa-0.15□□□□□ -2.43
CCDC88A-212ENST00000474059 BCL9LQ86UU0 1499 aa-0.16□□□□□ -2.43
CCDC88A-212ENST00000474059 Q8IZM0 81 aa-0.16□□□□□ -2.44
CCDC88A-212ENST00000474059 TSLPQ969D9 159 aa-0.16□□□□□ -2.44
CCDC88A-212ENST00000474059 NDUFA4L2Q9NRX3 87 aa-0.16□□□□□ -2.44
CCDC88A-212ENST00000474059 SBF2Q86WG5 1849 aa-0.16□□□□□ -2.44
CCDC88A-212ENST00000474059 NAIPQ13075 1403 aa-0.16□□□□□ -2.44
CCDC88A-212ENST00000474059 ROBO1Q9Y6N7 1651 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 FGF7P21781 194 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 CATR1Q13166 79 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 COX17Q14061 63 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 DEFB109BQ30KR1 87 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 Q5VSD8 79 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 PPP3R2Q96LZ3 170 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 MGST2Q99735 147 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 LINC00472Q9H8W2 130 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 WNK2Q9Y3S1 2297 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 PSME4Q14997 1843 aa-0.17□□□□□ -2.44
CCDC88A-212ENST00000474059 DMBT1Q9UGM3 2413 aaPredicted RBP-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 TRBV7-3A0A075B6L6 115 aa-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 TMEM170BQ5T4T1 132 aa-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 C1orf54Q8WWF1 131 aa-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 SPANXDQ9BXN6 97 aa-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 DYNLRB1Q9NP97 96 aa-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 CUL7Q14999 1698 aa-0.18□□□□□ -2.44
CCDC88A-212ENST00000474059 FAM208BQ5VWN6 2430 aa-0.19□□□□□ -2.44
CCDC88A-212ENST00000474059 F8VRH5 84 aa-0.19□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms