RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 NTF3P20783 257 aa8.65□□□□□ -1.02
CHD3-209ENST00000473376 SULT1A2P50226 295 aa8.65□□□□□ -1.02
CHD3-209ENST00000473376 NKX2-5P52952 324 aaPredicted RBP8.65□□□□□ -1.02
CHD3-209ENST00000473376 SSTP61278 116 aa8.65□□□□□ -1.02
CHD3-209ENST00000473376 COTL1Q14019 142 aa8.65□□□□□ -1.02
CHD3-209ENST00000473376 CLPSL2Q6UWE3 100 aa8.65□□□□□ -1.02
CHD3-209ENST00000473376 TEX261Q6UWH6 196 aa8.65□□□□□ -1.02
CHD3-209ENST00000473376 LRP1Q07954 4544 aaKnown RBP8.64□□□□□ -1.03
CHD3-209ENST00000473376 TRBV20OR9-2A0A075B6H5 130 aa8.64□□□□□ -1.03
CHD3-209ENST00000473376 IGLV4-60A0A075B6I1 120 aa8.64□□□□□ -1.03
CHD3-209ENST00000473376 UBE2L6O14933 153 aa8.64□□□□□ -1.03
CHD3-209ENST00000473376 LYZL1Q6UWQ5 148 aa8.64□□□□□ -1.03
CHD3-209ENST00000473376 PLA2G2DQ9UNK4 145 aa8.64□□□□□ -1.03
CHD3-209ENST00000473376 IGLV10-54A0A075B6I4 117 aa8.63□□□□□ -1.03
CHD3-209ENST00000473376 AMTP48728 403 aa8.63□□□□□ -1.03
CHD3-209ENST00000473376 MED9Q9NWA0 146 aa8.63□□□□□ -1.03
CHD3-209ENST00000473376 RAB19A4D1S5 217 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 PANO1I0J062 215 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 BCL2P10415 239 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 NUDT10Q8NFP7 164 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 SPACA4Q8TDM5 124 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 NUDT11Q96G61 164 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 PLAC8Q9NZF1 115 aa8.62□□□□□ -1.03
CHD3-209ENST00000473376 SLPIP03973 132 aa8.61□□□□□ -1.03
CHD3-209ENST00000473376 HNRNPA3P51991 378 aaKnown RBP8.61□□□□□ -1.03
CHD3-209ENST00000473376 GFRA4Q9GZZ7 299 aa8.61□□□□□ -1.03
CHD3-209ENST00000473376 PKIGQ9Y2B9 76 aa8.61□□□□□ -1.03
CHD3-209ENST00000473376 A0A087WYN8 130 aa8.6□□□□□ -1.03
CHD3-209ENST00000473376 ZNF25P17030 456 aaPredicted RBP8.6□□□□□ -1.03
CHD3-209ENST00000473376 TWIST1Q15672 202 aa8.6□□□□□ -1.03
CHD3-209ENST00000473376 SMIM15Q7Z3B0 74 aa8.6□□□□□ -1.03
CHD3-209ENST00000473376 SLC51BQ86UW2 128 aa8.6□□□□□ -1.03
CHD3-209ENST00000473376 GATD1Q8NB37 220 aa8.6□□□□□ -1.03
CHD3-209ENST00000473376 RPP21Q9H633 154 aaKnown RBP8.6□□□□□ -1.03
CHD3-209ENST00000473376 MT1HL1P0DM35 61 aa8.59□□□□□ -1.03
CHD3-209ENST00000473376 RPS10P46783 165 aaKnown RBP8.59□□□□□ -1.03
CHD3-209ENST00000473376 FOXA3P55318 350 aaPredicted RBP8.59□□□□□ -1.03
CHD3-209ENST00000473376 TCTE3Q8IZS6 198 aa8.59□□□□□ -1.03
CHD3-209ENST00000473376 C15orf56Q8N910 161 aa8.59□□□□□ -1.03
CHD3-209ENST00000473376 DPH3Q96FX2 82 aa8.59□□□□□ -1.03
CHD3-209ENST00000473376 LINC00474Q9P2X8 69 aa8.59□□□□□ -1.03
CHD3-209ENST00000473376 HMCN2Q8NDA2 5059 aa8.59□□□□□ -1.03
CHD3-209ENST00000473376 FAT3Q8TDW7 4589 aa8.58□□□□□ -1.04
CHD3-209ENST00000473376 GVQW2A0A096LPI5 108 aaPredicted RBP8.58□□□□□ -1.04
CHD3-209ENST00000473376 TRBV6-5A0A0K0K1A5 114 aa8.58□□□□□ -1.04
CHD3-209ENST00000473376 TMEM250H0YL14 139 aa8.58□□□□□ -1.04
CHD3-209ENST00000473376 NDUFS6O75380 124 aaKnown RBP8.58□□□□□ -1.04
CHD3-209ENST00000473376 C7orf33Q8WU49 177 aa8.58□□□□□ -1.04
CHD3-209ENST00000473376 GAGE12HA6NDE8 117 aa8.57□□□□□ -1.04
CHD3-209ENST00000473376 CT83Q5H943 113 aa8.57□□□□□ -1.04
CHD3-209ENST00000473376 AMMECR1LQ6DCA0 310 aa8.57□□□□□ -1.04
CHD3-209ENST00000473376 FAM231DQ6ZW35 169 aa8.57□□□□□ -1.04
CHD3-209ENST00000473376 OCC1Q8TAD7 63 aa8.56□□□□□ -1.04
CHD3-209ENST00000473376 SDHAF1A6NFY7 115 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 A8MWL6 223 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 I3L3M4 83 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 K7EN84 100 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 APCSP02743 223 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 FGF6P10767 208 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 OR5A1Q8NGJ0 315 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 GTSF1Q8WW33 167 aa8.55□□□□□ -1.04
CHD3-209ENST00000473376 CHCHD10Q8WYQ3 142 aaPredicted RBP8.55□□□□□ -1.04
CHD3-209ENST00000473376 RNASE7Q9H1E1 156 aaKnown RBP8.55□□□□□ -1.04
CHD3-209ENST00000473376 FAM231BA6NCW3 169 aa8.54□□□□□ -1.04
CHD3-209ENST00000473376 COX6A2Q02221 97 aa8.54□□□□□ -1.04
CHD3-209ENST00000473376 Q6ZNX1 250 aa8.54□□□□□ -1.04
CHD3-209ENST00000473376 BTF3L4Q96K17 158 aa8.54□□□□□ -1.04
CHD3-209ENST00000473376 PKHD1L1Q86WI1 4243 aa8.53□□□□□ -1.04
CHD3-209ENST00000473376 CHTF8P0CG12 524 aa8.53□□□□□ -1.04
CHD3-209ENST00000473376 ESDP10768 282 aa8.53□□□□□ -1.04
CHD3-209ENST00000473376 FOXI1Q12951 378 aa8.53□□□□□ -1.04
CHD3-209ENST00000473376 RNASEKQ6P5S7 137 aaKnown RBP8.53□□□□□ -1.04
CHD3-209ENST00000473376 MRPL52Q86TS9 123 aaKnown RBP8.53□□□□□ -1.04
CHD3-209ENST00000473376 LYPD6BQ8NI32 183 aa8.53□□□□□ -1.04
CHD3-209ENST00000473376 TMEM101Q96IK0 257 aa8.53□□□□□ -1.04
CHD3-209ENST00000473376 TRAV26-2A0A0B4J265 109 aa8.52□□□□□ -1.05
CHD3-209ENST00000473376 IGHV1-58A0A0C4DH39 117 aa8.52□□□□□ -1.05
CHD3-209ENST00000473376 PHOX2AO14813 284 aa8.52□□□□□ -1.05
CHD3-209ENST00000473376 CCL25O15444 150 aa8.52□□□□□ -1.05
CHD3-209ENST00000473376 BLOC1S1P78537 153 aa8.52□□□□□ -1.05
CHD3-209ENST00000473376 RPL39LQ96EH5 51 aaKnown RBP8.52□□□□□ -1.05
CHD3-209ENST00000473376 LINC01600Q96MT4 127 aa8.52□□□□□ -1.05
CHD3-209ENST00000473376 TRBV27A0A0K0K1C4 114 aa8.51□□□□□ -1.05
CHD3-209ENST00000473376 GATCO43716 136 aaKnown RBP8.51□□□□□ -1.05
CHD3-209ENST00000473376 PMCHP20382 165 aa8.51□□□□□ -1.05
CHD3-209ENST00000473376 PRSS3P2Q8NHM4 247 aa8.51□□□□□ -1.05
CHD3-209ENST00000473376 BORCS7Q96B45 105 aa8.51□□□□□ -1.05
CHD3-209ENST00000473376 CSDC2Q9Y534 153 aaKnown RBP8.51□□□□□ -1.05
CHD3-209ENST00000473376 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.5□□□□□ -1.05
CHD3-209ENST00000473376 LINC00959A0A1B0GUT2 108 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 IGKV2-29A2NJV5 120 aaPredicted RBP8.5□□□□□ -1.05
CHD3-209ENST00000473376 PPP1R17O96001 155 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 POLR2KP53803 58 aaKnown RBP8.5□□□□□ -1.05
CHD3-209ENST00000473376 PRR3P79522 188 aaKnown RBP8.5□□□□□ -1.05
CHD3-209ENST00000473376 SMAGPQ0VAQ4 97 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 MAJINQ3KP22 176 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 CD164L2Q6UWJ8 174 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 STPG4Q8N801 248 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 MRAP2Q96G30 205 aa8.5□□□□□ -1.05
CHD3-209ENST00000473376 TMEM191AQ9H0A3 160 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms