RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PGLYRP4Q96LB8 373 aa11.37□□□□□ -0.59
COL7A1-206ENST00000466591 RNASE7Q9H1E1 156 aaKnown RBP11.37□□□□□ -0.59
COL7A1-206ENST00000466591 HERC1Q15751 4861 aa11.37□□□□□ -0.59
COL7A1-206ENST00000466591 TRBV20OR9-2A0A075B6H5 130 aa11.36□□□□□ -0.59
COL7A1-206ENST00000466591 CTRLP40313 264 aa11.36□□□□□ -0.59
COL7A1-206ENST00000466591 C9orf62Q8N4C0 152 aa11.36□□□□□ -0.59
COL7A1-206ENST00000466591 C9orf163Q8N9P6 203 aa11.35□□□□□ -0.59
COL7A1-206ENST00000466591 IGLV4-60A0A075B6I1 120 aa11.34□□□□□ -0.59
COL7A1-206ENST00000466591 A0A1B0GUV1 79 aa11.34□□□□□ -0.59
COL7A1-206ENST00000466591 RNASEKQ6P5S7 137 aaKnown RBP11.34□□□□□ -0.59
COL7A1-206ENST00000466591 C20orf203Q8NBC4 194 aa11.34□□□□□ -0.59
COL7A1-206ENST00000466591 MYCBP2O75592 4640 aa11.34□□□□□ -0.59
COL7A1-206ENST00000466591 TRAV26-2A0A0B4J265 109 aa11.33□□□□□ -0.6
COL7A1-206ENST00000466591 KRTAP29-1A8MX34 341 aaPredicted RBP11.33□□□□□ -0.6
COL7A1-206ENST00000466591 GATCO43716 136 aaKnown RBP11.33□□□□□ -0.6
COL7A1-206ENST00000466591 BLOC1S1P78537 153 aa11.33□□□□□ -0.6
COL7A1-206ENST00000466591 AKAP14Q86UN6 197 aa11.33□□□□□ -0.6
COL7A1-206ENST00000466591 OCC1Q8TAD7 63 aa11.33□□□□□ -0.6
COL7A1-206ENST00000466591 IGHV3-64A0A075B6Q5 118 aa11.32□□□□□ -0.6
COL7A1-206ENST00000466591 APCSP02743 223 aa11.32□□□□□ -0.6
COL7A1-206ENST00000466591 CFAP161Q6P656 301 aa11.32□□□□□ -0.6
COL7A1-206ENST00000466591 TEX261Q6UWH6 196 aa11.32□□□□□ -0.6
COL7A1-206ENST00000466591 hCG_2014768A0A024R1R8 64 aa11.3□□□□□ -0.6
COL7A1-206ENST00000466591 A8MWL6 223 aa11.3□□□□□ -0.6
COL7A1-206ENST00000466591 K7EN84 100 aa11.3□□□□□ -0.6
COL7A1-206ENST00000466591 ALKAL2Q6UX46 152 aa11.3□□□□□ -0.6
COL7A1-206ENST00000466591 GATD1Q8NB37 220 aa11.3□□□□□ -0.6
COL7A1-206ENST00000466591 BTF3L4Q96K17 158 aa11.3□□□□□ -0.6
COL7A1-206ENST00000466591 GAGE12HA6NDE8 117 aa11.29□□□□□ -0.6
COL7A1-206ENST00000466591 TMEM250H0YL14 139 aa11.29□□□□□ -0.6
COL7A1-206ENST00000466591 NCR2O95944 276 aa11.29□□□□□ -0.6
COL7A1-206ENST00000466591 PMCHP20382 165 aa11.29□□□□□ -0.6
COL7A1-206ENST00000466591 KRTAP26-1Q6PEX3 210 aa11.29□□□□□ -0.6
COL7A1-206ENST00000466591 RPL39LQ96EH5 51 aaKnown RBP11.29□□□□□ -0.6
COL7A1-206ENST00000466591 CNFNQ9BYD5 112 aa11.29□□□□□ -0.6
COL7A1-206ENST00000466591 EIF5A2Q9GZV4 153 aaKnown RBP11.29□□□□□ -0.6
COL7A1-206ENST00000466591 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.29□□□□□ -0.6
COL7A1-206ENST00000466591 OXTP01178 125 aa11.28□□□□□ -0.6
COL7A1-206ENST00000466591 CNBPP62633 177 aaKnown RBP11.28□□□□□ -0.6
COL7A1-206ENST00000466591 TMEM101Q96IK0 257 aa11.28□□□□□ -0.6
COL7A1-206ENST00000466591 GFRA4Q9GZZ7 299 aa11.28□□□□□ -0.6
COL7A1-206ENST00000466591 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.27□□□□□ -0.61
COL7A1-206ENST00000466591 IGKV2-29A2NJV5 120 aaPredicted RBP11.27□□□□□ -0.61
COL7A1-206ENST00000466591 GTSF1Q8WW33 167 aa11.27□□□□□ -0.61
COL7A1-206ENST00000466591 SDHAF1A6NFY7 115 aa11.26□□□□□ -0.61
COL7A1-206ENST00000466591 I3L3M4 83 aa11.26□□□□□ -0.61
COL7A1-206ENST00000466591 Q6ZNX1 250 aa11.26□□□□□ -0.61
COL7A1-206ENST00000466591 SDIM1Q6ZPB5 146 aa11.26□□□□□ -0.61
COL7A1-206ENST00000466591 SMIM7Q9BQ49 75 aa11.26□□□□□ -0.61
COL7A1-206ENST00000466591 H7C423 109 aa11.25□□□□□ -0.61
COL7A1-206ENST00000466591 FGF6P10767 208 aa11.25□□□□□ -0.61
COL7A1-206ENST00000466591 HIGD2BQ4VC39 106 aa11.25□□□□□ -0.61
COL7A1-206ENST00000466591 SERTAD4-AS1Q5TG53 156 aa11.25□□□□□ -0.61
COL7A1-206ENST00000466591 FOXA3P55318 350 aaPredicted RBP11.24□□□□□ -0.61
COL7A1-206ENST00000466591 FAM231DQ6ZW35 169 aa11.24□□□□□ -0.61
COL7A1-206ENST00000466591 CHCHD10Q8WYQ3 142 aaPredicted RBP11.24□□□□□ -0.61
COL7A1-206ENST00000466591 ST20Q9HBF5 79 aa11.24□□□□□ -0.61
COL7A1-206ENST00000466591 ZNF25P17030 456 aaPredicted RBP11.23□□□□□ -0.61
COL7A1-206ENST00000466591 OR5A1Q8NGJ0 315 aa11.23□□□□□ -0.61
COL7A1-206ENST00000466591 MRAP2Q96G30 205 aa11.23□□□□□ -0.61
COL7A1-206ENST00000466591 RNF185Q96GF1 192 aa11.23□□□□□ -0.61
COL7A1-206ENST00000466591 A0A1B0GUT8 65 aa11.22□□□□□ -0.61
COL7A1-206ENST00000466591 ZNF727A8MUV8 499 aa11.22□□□□□ -0.61
COL7A1-206ENST00000466591 PANO1I0J062 215 aa11.22□□□□□ -0.61
COL7A1-206ENST00000466591 RPS10P46783 165 aaKnown RBP11.22□□□□□ -0.61
COL7A1-206ENST00000466591 CT83Q5H943 113 aa11.22□□□□□ -0.61
COL7A1-206ENST00000466591 C7orf33Q8WU49 177 aa11.22□□□□□ -0.61
COL7A1-206ENST00000466591 CHTF8P0CG12 524 aa11.21□□□□□ -0.61
COL7A1-206ENST00000466591 XCL1P47992 114 aa11.21□□□□□ -0.61
COL7A1-206ENST00000466591 KRTAP10-4P60372 401 aaPredicted RBP11.21□□□□□ -0.61
COL7A1-206ENST00000466591 IGKV2-24A0A0C4DH68 120 aa11.2□□□□□ -0.62
COL7A1-206ENST00000466591 HIGD1CA8MV81 97 aa11.2□□□□□ -0.62
COL7A1-206ENST00000466591 C15orf56Q8N910 161 aa11.2□□□□□ -0.62
COL7A1-206ENST00000466591 TSKUQ8WUA8 353 aa11.2□□□□□ -0.62
COL7A1-206ENST00000466591 TMEM242Q9NWH2 141 aa11.2□□□□□ -0.62
COL7A1-206ENST00000466591 PKIGQ9Y2B9 76 aa11.2□□□□□ -0.62
COL7A1-206ENST00000466591 A0A087WYN8 130 aa11.19□□□□□ -0.62
COL7A1-206ENST00000466591 FCER1GP30273 86 aa11.19□□□□□ -0.62
COL7A1-206ENST00000466591 COX6A2Q02221 97 aa11.19□□□□□ -0.62
COL7A1-206ENST00000466591 SS18Q15532 418 aa11.19□□□□□ -0.62
COL7A1-206ENST00000466591 MAJINQ3KP22 176 aa11.19□□□□□ -0.62
COL7A1-206ENST00000466591 NDUFS6O75380 124 aaKnown RBP11.18□□□□□ -0.62
COL7A1-206ENST00000466591 SMAGPQ0VAQ4 97 aa11.18□□□□□ -0.62
COL7A1-206ENST00000466591 RIGQ13278 110 aa11.18□□□□□ -0.62
COL7A1-206ENST00000466591 LINC01551Q86U37 167 aa11.18□□□□□ -0.62
COL7A1-206ENST00000466591 SPACA4Q8TDM5 124 aa11.18□□□□□ -0.62
COL7A1-206ENST00000466591 TMEM191AQ9H0A3 160 aa11.18□□□□□ -0.62
COL7A1-206ENST00000466591 TRBV6-5A0A0K0K1A5 114 aa11.17□□□□□ -0.62
COL7A1-206ENST00000466591 CCL25O15444 150 aa11.17□□□□□ -0.62
COL7A1-206ENST00000466591 SLPIP03973 132 aa11.17□□□□□ -0.62
COL7A1-206ENST00000466591 C7orf77A4D0Y5 90 aa11.16□□□□□ -0.62
COL7A1-206ENST00000466591 ZNF561-AS1K7EIQ3 104 aa11.16□□□□□ -0.62
COL7A1-206ENST00000466591 FAM210AQ96ND0 272 aa11.16□□□□□ -0.62
COL7A1-206ENST00000466591 OSTCQ9NRP0 149 aa11.16□□□□□ -0.62
COL7A1-206ENST00000466591 PLA2G2DQ9UNK4 145 aa11.16□□□□□ -0.62
COL7A1-206ENST00000466591 GVQW2A0A096LPI5 108 aaPredicted RBP11.15□□□□□ -0.62
COL7A1-206ENST00000466591 IGHV1-58A0A0C4DH39 117 aa11.15□□□□□ -0.62
COL7A1-206ENST00000466591 FAM231BA6NCW3 169 aa11.15□□□□□ -0.62
COL7A1-206ENST00000466591 PPP1R17O96001 155 aa11.15□□□□□ -0.62
COL7A1-206ENST00000466591 HNRNPA3P51991 378 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms