RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 H3BRM9 83 aa13.18□□□□□ -0.3
COL9A3-205ENST00000466192 I3L3M4 83 aa13.18□□□□□ -0.3
COL9A3-205ENST00000466192 EDA2RQ9HAV5 297 aa13.18□□□□□ -0.3
COL9A3-205ENST00000466192 C9orf118A6NHY6 69 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 INSL3P51460 131 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 Q6ZSN1 163 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 CSNK1G2-AS1Q8NCQ2 148 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 Q9UF83 564 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 LINC01549A6NIU2 74 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 C9orf66Q5T8R8 295 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 BAHCC1Q9P281 2608 aa13.17□□□□□ -0.3
COL9A3-205ENST00000466192 TMEM263Q8WUH6 116 aaKnown RBP13.16□□□□□ -0.3
COL9A3-205ENST00000466192 A6NDN8 102 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 RHOHQ15669 191 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 SIVA1O15304 175 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 RS1O15537 224 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 CIDEAO60543 219 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 TIMM17AQ99595 171 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 C1QTNF4Q9BXJ3 329 aa13.15□□□□□ -0.3
COL9A3-205ENST00000466192 K7EP34 96 aa13.14□□□□□ -0.31
COL9A3-205ENST00000466192 TMEM141Q96I45 108 aa13.14□□□□□ -0.31
COL9A3-205ENST00000466192 TNFRSF18Q9Y5U5 241 aa13.14□□□□□ -0.31
COL9A3-205ENST00000466192 TRGV1A0A0A0MS02 117 aa13.13□□□□□ -0.31
COL9A3-205ENST00000466192 RHODO00212 210 aa13.13□□□□□ -0.31
COL9A3-205ENST00000466192 EMP1P54849 157 aa13.13□□□□□ -0.31
COL9A3-205ENST00000466192 HSD52Q0P140 79 aa13.13□□□□□ -0.31
COL9A3-205ENST00000466192 PMVKQ15126 192 aa13.13□□□□□ -0.31
COL9A3-205ENST00000466192 PLAC8L1A1L4L8 177 aa13.12□□□□□ -0.31
COL9A3-205ENST00000466192 Q6ZTI0 123 aa13.12□□□□□ -0.31
COL9A3-205ENST00000466192 C20orf203Q8NBC4 194 aa13.12□□□□□ -0.31
COL9A3-205ENST00000466192 OPRPNQ99935 248 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-205ENST00000466192 IGHV3-53P01767 116 aa13.11□□□□□ -0.31
COL9A3-205ENST00000466192 H3BUT2 72 aa13.11□□□□□ -0.31
COL9A3-205ENST00000466192 MAPKAPK5-AS1Q8N8E1 139 aa13.11□□□□□ -0.31
COL9A3-205ENST00000466192 IGLV4-69A0A075B6H9 119 aa13.1□□□□□ -0.31
COL9A3-205ENST00000466192 TRBV25-1A0A075B6N4 114 aa13.1□□□□□ -0.31
COL9A3-205ENST00000466192 C16orf74Q96GX8 76 aa13.1□□□□□ -0.31
COL9A3-205ENST00000466192 NOP10Q9NPE3 64 aaKnown RBP13.1□□□□□ -0.31
COL9A3-205ENST00000466192 OR5A1Q8NGJ0 315 aa13.1□□□□□ -0.31
COL9A3-205ENST00000466192 C11orf86A6NJI1 115 aa13.09□□□□□ -0.31
COL9A3-205ENST00000466192 CYSRT1A8MQ03 144 aa13.09□□□□□ -0.31
COL9A3-205ENST00000466192 DAZ2Q13117 558 aaKnown RBP13.09□□□□□ -0.31
COL9A3-205ENST00000466192 ZNF479Q96JC4 524 aa13.08□□□□□ -0.31
COL9A3-205ENST00000466192 RRN3P1Q2M238 152 aa13.08□□□□□ -0.32
COL9A3-205ENST00000466192 WFDC9Q8NEX5 89 aa13.07□□□□□ -0.32
COL9A3-205ENST00000466192 OR11H2Q8NH07 326 aa13.07□□□□□ -0.32
COL9A3-205ENST00000466192 IGHV3-38A0A0C4DH36 116 aa13.07□□□□□ -0.32
COL9A3-205ENST00000466192 KRTAP24-1Q3LI83 254 aa13.07□□□□□ -0.32
COL9A3-205ENST00000466192 PHLDA1Q8WV24 401 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-205ENST00000466192 CHAC1Q9BUX1 264 aa13.07□□□□□ -0.32
COL9A3-205ENST00000466192 HIGD1BQ9P298 99 aa13.07□□□□□ -0.32
COL9A3-205ENST00000466192 FBN1P35555 2871 aaKnown RBP13.06□□□□□ -0.32
COL9A3-205ENST00000466192 A0A1W2PPM0 123 aa13.06□□□□□ -0.32
COL9A3-205ENST00000466192 E9PLD3 99 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 PAPPA-AS1Q5QFB9 102 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 ZNRF2Q8NHG8 242 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 PRADC1Q9BSG0 188 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 NBEAL2Q6ZNJ1 2754 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 TRAV4A0A0B4J268 109 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 DNAJC30Q96LL9 226 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 OVOL2Q9BRP0 275 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 SPCS1Q9Y6A9 102 aa13.05□□□□□ -0.32
COL9A3-205ENST00000466192 IGLV4-3A0A075B6K6 122 aa13.04□□□□□ -0.32
COL9A3-205ENST00000466192 TMEM170BQ5T4T1 132 aa13.04□□□□□ -0.32
COL9A3-205ENST00000466192 CEMP1Q6PRD7 247 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-205ENST00000466192 NAA38Q9BRA0 125 aaKnown RBP13.04□□□□□ -0.32
COL9A3-205ENST00000466192 GAGE7O76087 117 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 GAGE12FP0CL80 117 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 GAGE12GP0CL81 117 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 GAGE12IP0CL82 117 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 VCX2Q9H322 139 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 MYMXA0A1B0GTQ4 84 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 GCSHP23434 173 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 CHCHD7Q9BUK0 85 aa13.03□□□□□ -0.32
COL9A3-205ENST00000466192 RAB37Q96AX2 223 aa13.02□□□□□ -0.33
COL9A3-205ENST00000466192 FABP2P12104 132 aa13.01□□□□□ -0.33
COL9A3-205ENST00000466192 PYGO1Q9Y3Y4 419 aa13.01□□□□□ -0.33
COL9A3-205ENST00000466192 STAB1Q9NY15 2570 aa13.01□□□□□ -0.33
COL9A3-205ENST00000466192 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.01□□□□□ -0.33
COL9A3-205ENST00000466192 IGKV2-29A2NJV5 120 aaPredicted RBP13.01□□□□□ -0.33
COL9A3-205ENST00000466192 WIPF1O43516 503 aa13.01□□□□□ -0.33
COL9A3-205ENST00000466192 TRBV7-3A0A075B6L6 115 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 TRGV2A0A075B6R0 118 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 SCGB1A1P11684 91 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 HERVK_113P61574 105 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 FAM104AQ969W3 186 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 CMYA5Q8N3K9 4069 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 K7EQD1 137 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 FXYD2P54710 66 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 RNASE13Q5GAN3 156 aaKnown RBP13□□□□□ -0.33
COL9A3-205ENST00000466192 SLC25A29Q8N8R3 303 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 X6R8D5 127 aa13□□□□□ -0.33
COL9A3-205ENST00000466192 ZNF815PA8K554 130 aa12.99□□□□□ -0.33
COL9A3-205ENST00000466192 NFE4Q86UQ8 179 aa12.99□□□□□ -0.33
COL9A3-205ENST00000466192 A0A0J9YXV3 536 aa12.98□□□□□ -0.33
COL9A3-205ENST00000466192 SAMD5Q5TGI4 173 aa12.98□□□□□ -0.33
COL9A3-205ENST00000466192 UBE2D4Q9Y2X8 147 aa12.98□□□□□ -0.33
COL9A3-205ENST00000466192 TRBV10-1A0A0K0K1A3 114 aa12.98□□□□□ -0.33
COL9A3-205ENST00000466192 SMIM13P0DJ93 91 aa12.98□□□□□ -0.33
COL9A3-205ENST00000466192 RPL36AP83881 106 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms