RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 NUPR2A6NF83 97 aa8.33□□□□□ -1.08
USP54-209ENST00000464635 DAZ4Q86SG3 579 aaKnown RBP8.33□□□□□ -1.08
USP54-209ENST00000464635 NEXN-AS1Q8NBZ9 246 aa8.33□□□□□ -1.08
USP54-209ENST00000464635 TMEM141Q96I45 108 aa8.33□□□□□ -1.08
USP54-209ENST00000464635 TIMM17AQ99595 171 aa8.33□□□□□ -1.08
USP54-209ENST00000464635 DAZ3Q9NR90 486 aaKnown RBP8.33□□□□□ -1.08
USP54-209ENST00000464635 CYSLTR1Q9Y271 337 aa8.33□□□□□ -1.08
USP54-209ENST00000464635 TRGV2A0A075B6R0 118 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.32□□□□□ -1.08
USP54-209ENST00000464635 K7EQD1 137 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 PKIAP61925 76 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 RPL36AP83881 106 aaKnown RBP8.32□□□□□ -1.08
USP54-209ENST00000464635 TMEM97Q5BJF2 176 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 CEMP1Q6PRD7 247 aaPredicted RBP8.32□□□□□ -1.08
USP54-209ENST00000464635 C2orf66Q6UXQ4 117 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 OR11H2Q8NH07 326 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 RPL36ALQ969Q0 106 aaKnown RBP8.32□□□□□ -1.08
USP54-209ENST00000464635 ZNF479Q96JC4 524 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 PYGO1Q9Y3Y4 419 aa8.32□□□□□ -1.08
USP54-209ENST00000464635 DEFB4AO15263 64 aa8.31□□□□□ -1.08
USP54-209ENST00000464635 LY6G6CO95867 125 aa8.31□□□□□ -1.08
USP54-209ENST00000464635 PAPPA-AS1Q5QFB9 102 aa8.31□□□□□ -1.08
USP54-209ENST00000464635 Q8NAQ8 132 aa8.31□□□□□ -1.08
USP54-209ENST00000464635 C20orf203Q8NBC4 194 aa8.31□□□□□ -1.08
USP54-209ENST00000464635 GTSF1LQ9H1H1 148 aa8.31□□□□□ -1.08
USP54-209ENST00000464635 TRAV9-2A0A087WT02 112 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 IGIPA6NJ69 53 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 TSTD3H0UI37 97 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 TSHBP01222 138 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 NANOS2P60321 138 aaKnown RBP8.3□□□□□ -1.08
USP54-209ENST00000464635 SMAGPQ0VAQ4 97 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 FHL2Q14192 279 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 Q6ZSN1 163 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 LINC00173Q6ZV60 143 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 PHLDA1Q8WV24 401 aaPredicted RBP8.3□□□□□ -1.08
USP54-209ENST00000464635 PRADC1Q9BSG0 188 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 DKK2Q9UBU2 259 aa8.3□□□□□ -1.08
USP54-209ENST00000464635 GAGE12BA1L429 117 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 H7C423 109 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 GAGE7O76087 117 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 GAGE12FP0CL80 117 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 GAGE12GP0CL81 117 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 GAGE12IP0CL82 117 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 SPART-AS1P0CW21 52 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 UBE2D3P61077 147 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 UBE2D2P62837 147 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 ZNF664Q8N3J9 261 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 SLC25A29Q8N8R3 303 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 SCGB3A1Q96QR1 104 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 VAMP8Q9BV40 100 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 TIMM21Q9BVV7 248 aa8.29□□□□□ -1.08
USP54-209ENST00000464635 C11orf68Q9H3H3 251 aaKnown RBP8.29□□□□□ -1.08
USP54-209ENST00000464635 A0A087WX48 190 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 IGHV4-28A0A0C4DH34 117 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 PRSS1P07477 247 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 P0DMU3 169 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 FAM231AP0DMU4 169 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 FAM231CP0DMU5 169 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 COTL1Q14019 142 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 Q6ZN92 141 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 PRO0255Q9UI72 69 aa8.28□□□□□ -1.08
USP54-209ENST00000464635 CSDC2Q9Y534 153 aaKnown RBP8.28□□□□□ -1.08
USP54-209ENST00000464635 VPS13DQ5THJ4 4388 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 IGHV3-73A0A0B4J1V6 119 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 TRGV4A0A0C4DH28 118 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 LINC00694P0DN24 101 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 ODF1Q14990 250 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 FAM222AQ5U5X8 452 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 CDPF1Q6NVV7 123 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 SPANXA1Q9NS26 97 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 HHLA3Q9XRX5 114 aa8.27□□□□□ -1.09
USP54-209ENST00000464635 KLK5Q9Y337 293 aaPredicted RBP8.27□□□□□ -1.09
USP54-209ENST00000464635 HSBP1L1C9JCN9 74 aa8.26□□□□□ -1.09
USP54-209ENST00000464635 SH2D6Q7Z4S9 175 aa8.26□□□□□ -1.09
USP54-209ENST00000464635 ZNRF2Q8NHG8 242 aa8.26□□□□□ -1.09
USP54-209ENST00000464635 C11orf45Q8TAV5 145 aa8.26□□□□□ -1.09
USP54-209ENST00000464635 TRAV26-1A0A087WT03 109 aa8.25□□□□□ -1.09
USP54-209ENST00000464635 F8VRH5 84 aa8.25□□□□□ -1.09
USP54-209ENST00000464635 H3BNG1 76 aa8.25□□□□□ -1.09
USP54-209ENST00000464635 ATP5G1P05496 136 aa8.25□□□□□ -1.09
USP54-209ENST00000464635 PLNP26678 52 aa8.25□□□□□ -1.09
USP54-209ENST00000464635 MRPS36P82909 103 aaKnown RBP8.25□□□□□ -1.09
USP54-209ENST00000464635 CHCHD7Q9BUK0 85 aa8.25□□□□□ -1.09
USP54-209ENST00000464635 DPM2O94777 84 aa8.24□□□□□ -1.09
USP54-209ENST00000464635 DAD1P61803 113 aa8.24□□□□□ -1.09
USP54-209ENST00000464635 PMVKQ15126 192 aa8.24□□□□□ -1.09
USP54-209ENST00000464635 MRPL52Q86TS9 123 aaKnown RBP8.24□□□□□ -1.09
USP54-209ENST00000464635 BAALCQ8WXS3 180 aa8.24□□□□□ -1.09
USP54-209ENST00000464635 DNAH10Q8IVF4 4471 aa8.24□□□□□ -1.09
USP54-209ENST00000464635 IGKCP01834 107 aa8.23□□□□□ -1.09
USP54-209ENST00000464635 DEFB130BP0DP73 79 aa8.23□□□□□ -1.09
USP54-209ENST00000464635 DEFB130AP0DP74 79 aa8.23□□□□□ -1.09
USP54-209ENST00000464635 EMP1P54849 157 aa8.23□□□□□ -1.09
USP54-209ENST00000464635 NEGR1Q7Z3B1 354 aa8.23□□□□□ -1.09
USP54-209ENST00000464635 AMELXQ99217 191 aa8.23□□□□□ -1.09
USP54-209ENST00000464635 FRAS1Q86XX4 4008 aa8.22□□□□□ -1.09
USP54-209ENST00000464635 PRSS29PA6NIE9 313 aa8.22□□□□□ -1.09
USP54-209ENST00000464635 SPATA45Q537H7 98 aa8.22□□□□□ -1.09
USP54-209ENST00000464635 PMCHL2Q9BQD1 86 aa8.22□□□□□ -1.09
USP54-209ENST00000464635 MIEN1Q9BRT3 115 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms