RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 SMIM15Q7Z3B0 74 aa6.67□□□□□ -1.34
SF3A3-204ENST00000462258 LINC01551Q86U37 167 aa6.67□□□□□ -1.34
SF3A3-204ENST00000462258 LINC00269Q8N2A0 174 aa6.67□□□□□ -1.34
SF3A3-204ENST00000462258 PRR34Q9NV39 138 aa6.67□□□□□ -1.34
SF3A3-204ENST00000462258 MYCBP2O75592 4640 aa6.67□□□□□ -1.34
SF3A3-204ENST00000462258 ZNF727A8MUV8 499 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 A8MWL6 223 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 AMTP48728 403 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 COTL1Q14019 142 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 GATD1Q8NB37 220 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 DEFB104AQ8WTQ1 72 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 BORCS7Q96B45 105 aa6.66□□□□□ -1.34
SF3A3-204ENST00000462258 USP17L23D6RBM5 183 aa6.65□□□□□ -1.34
SF3A3-204ENST00000462258 UBE2L6O14933 153 aa6.65□□□□□ -1.34
SF3A3-204ENST00000462258 SRP19P09132 144 aaKnown RBP6.65□□□□□ -1.34
SF3A3-204ENST00000462258 REG3AQ06141 175 aa6.65□□□□□ -1.34
SF3A3-204ENST00000462258 C20orf203Q8NBC4 194 aa6.65□□□□□ -1.34
SF3A3-204ENST00000462258 RPL39LQ96EH5 51 aaKnown RBP6.65□□□□□ -1.34
SF3A3-204ENST00000462258 IGLV4-60A0A075B6I1 120 aa6.64□□□□□ -1.35
SF3A3-204ENST00000462258 IGLV10-54A0A075B6I4 117 aa6.64□□□□□ -1.35
SF3A3-204ENST00000462258 FAM229AH3BQW9 127 aa6.64□□□□□ -1.35
SF3A3-204ENST00000462258 INAFM2P0DMQ5 153 aa6.64□□□□□ -1.35
SF3A3-204ENST00000462258 FOXA3P55318 350 aaPredicted RBP6.64□□□□□ -1.35
SF3A3-204ENST00000462258 TSKUQ8WUA8 353 aa6.64□□□□□ -1.35
SF3A3-204ENST00000462258 A0A1B0GUV1 79 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 HIGD1CA8MV81 97 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 APCSP02743 223 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 HERC1Q15751 4861 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 KRTAP26-1Q6PEX3 210 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 TEX261Q6UWH6 196 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 SCXQ7RTU7 201 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 GFRA4Q9GZZ7 299 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 OSTCQ9NRP0 149 aa6.63□□□□□ -1.35
SF3A3-204ENST00000462258 SRRM2Q9UQ35 2752 aaKnown RBP6.62□□□□□ -1.35
SF3A3-204ENST00000462258 TRAV8-4A0A0B4J246 113 aa6.62□□□□□ -1.35
SF3A3-204ENST00000462258 A0A1B0GUT8 65 aa6.62□□□□□ -1.35
SF3A3-204ENST00000462258 FAM231BA6NCW3 169 aa6.62□□□□□ -1.35
SF3A3-204ENST00000462258 SDHAF1A6NFY7 115 aa6.62□□□□□ -1.35
SF3A3-204ENST00000462258 NCR2O95944 276 aa6.62□□□□□ -1.35
SF3A3-204ENST00000462258 PRSS1P07477 247 aa6.61□□□□□ -1.35
SF3A3-204ENST00000462258 ADIRFQ15847 76 aa6.61□□□□□ -1.35
SF3A3-204ENST00000462258 FAM74A3Q4VXF1 159 aa6.61□□□□□ -1.35
SF3A3-204ENST00000462258 ISOC2Q96AB3 205 aa6.61□□□□□ -1.35
SF3A3-204ENST00000462258 TMEM191AQ9H0A3 160 aa6.61□□□□□ -1.35
SF3A3-204ENST00000462258 V9GYV3 84 aa6.61□□□□□ -1.35
SF3A3-204ENST00000462258 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-204ENST00000462258 TRBV6-5A0A0K0K1A5 114 aa6.6□□□□□ -1.35
SF3A3-204ENST00000462258 IGKV2-29A2NJV5 120 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-204ENST00000462258 I3L3M4 83 aa6.6□□□□□ -1.35
SF3A3-204ENST00000462258 RPL23P62829 140 aaKnown RBP6.6□□□□□ -1.35
SF3A3-204ENST00000462258 TMEM241Q24JQ0 296 aa6.6□□□□□ -1.35
SF3A3-204ENST00000462258 AMMECR1LQ6DCA0 310 aa6.6□□□□□ -1.35
SF3A3-204ENST00000462258 CHAC1Q9BUX1 264 aa6.6□□□□□ -1.35
SF3A3-204ENST00000462258 NAT8Q9UHE5 227 aa6.6□□□□□ -1.35
SF3A3-204ENST00000462258 DMBT1Q9UGM3 2413 aaPredicted RBP6.6□□□□□ -1.35
SF3A3-204ENST00000462258 IGKV3OR2-268A0A0C4DH90 116 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 hDV102S1A0JD36 115 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 C9JQL5 133 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 H7C423 109 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 GAS8-AS1O95177 125 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 PLA2G1BP04054 148 aaKnown RBP6.59□□□□□ -1.35
SF3A3-204ENST00000462258 SRSF3P84103 164 aaKnown RBP6.59□□□□□ -1.35
SF3A3-204ENST00000462258 RIGQ13278 110 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 RNASEKQ6P5S7 137 aaKnown RBP6.59□□□□□ -1.35
SF3A3-204ENST00000462258 AMN1Q8IY45 258 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 NUP35Q8NFH5 326 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 MRAP2Q96G30 205 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 RNF185Q96GF1 192 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 ST20Q9HBF5 79 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 TMEM242Q9NWH2 141 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 NAT8BQ9UHF3 227 aa6.59□□□□□ -1.35
SF3A3-204ENST00000462258 FLG2Q5D862 2391 aaPredicted RBP6.59□□□□□ -1.35
SF3A3-204ENST00000462258 TSHBP01222 138 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 FGF6P10767 208 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 ZNF25P17030 456 aaPredicted RBP6.58□□□□□ -1.36
SF3A3-204ENST00000462258 PMCHP20382 165 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 RPS10P46783 165 aaKnown RBP6.58□□□□□ -1.36
SF3A3-204ENST00000462258 PEA15Q15121 130 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 DGAT2L7PQ6IED9 249 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 CLRN3Q8NCR9 226 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 CIRBP-AS1Q8TBR5 109 aa6.58□□□□□ -1.36
SF3A3-204ENST00000462258 GAGE12HA6NDE8 117 aa6.57□□□□□ -1.36
SF3A3-204ENST00000462258 SMKR1H3BMG3 65 aa6.57□□□□□ -1.36
SF3A3-204ENST00000462258 RAB4AP20338 218 aa6.57□□□□□ -1.36
SF3A3-204ENST00000462258 CNBPP62633 177 aaKnown RBP6.57□□□□□ -1.36
SF3A3-204ENST00000462258 C9orf163Q8N9P6 203 aa6.57□□□□□ -1.36
SF3A3-204ENST00000462258 BTF3L4Q96K17 158 aa6.57□□□□□ -1.36
SF3A3-204ENST00000462258 SMDT1Q9H4I9 107 aa6.57□□□□□ -1.36
SF3A3-204ENST00000462258 C7orf77A4D0Y5 90 aa6.56□□□□□ -1.36
SF3A3-204ENST00000462258 C15orf56Q8N910 161 aa6.56□□□□□ -1.36
SF3A3-204ENST00000462258 CHCHD10Q8WYQ3 142 aaPredicted RBP6.56□□□□□ -1.36
SF3A3-204ENST00000462258 TMEM101Q96IK0 257 aa6.56□□□□□ -1.36
SF3A3-204ENST00000462258 AP5S1Q9NUS5 200 aa6.56□□□□□ -1.36
SF3A3-204ENST00000462258 PKHD1L1Q86WI1 4243 aa6.55□□□□□ -1.36
SF3A3-204ENST00000462258 TRBV27A0A0K0K1C4 114 aa6.55□□□□□ -1.36
SF3A3-204ENST00000462258 SMIM27A0A1W2PRY6 76 aa6.55□□□□□ -1.36
SF3A3-204ENST00000462258 ESDP10768 282 aa6.55□□□□□ -1.36
SF3A3-204ENST00000462258 POLR2KP53803 58 aaKnown RBP6.55□□□□□ -1.36
SF3A3-204ENST00000462258 NRACQ8N912 160 aa6.55□□□□□ -1.36
SF3A3-204ENST00000462258 OR5A1Q8NGJ0 315 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms