RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PLA2G1BP04054 148 aaKnown RBP13.43□□□□□ -0.26
SDC1-205ENST00000447124 BLOC1S1P78537 153 aa13.43□□□□□ -0.26
SDC1-205ENST00000447124 GATD1Q8NB37 220 aa13.43□□□□□ -0.26
SDC1-205ENST00000447124 TMEM243Q9BU79 118 aa13.43□□□□□ -0.26
SDC1-205ENST00000447124 KRTAP10-4P60372 401 aaPredicted RBP13.42□□□□□ -0.26
SDC1-205ENST00000447124 REG3AQ06141 175 aa13.42□□□□□ -0.26
SDC1-205ENST00000447124 PGLYRP4Q96LB8 373 aa13.42□□□□□ -0.26
SDC1-205ENST00000447124 IGLV10-54A0A075B6I4 117 aa13.41□□□□□ -0.26
SDC1-205ENST00000447124 TRAV26-2A0A0B4J265 109 aa13.41□□□□□ -0.26
SDC1-205ENST00000447124 TMEM250H0YL14 139 aa13.41□□□□□ -0.26
SDC1-205ENST00000447124 GATCO43716 136 aaKnown RBP13.39□□□□□ -0.27
SDC1-205ENST00000447124 DGAT2L7PQ6IED9 249 aa13.39□□□□□ -0.27
SDC1-205ENST00000447124 C9orf163Q8N9P6 203 aa13.39□□□□□ -0.27
SDC1-205ENST00000447124 LRP1Q07954 4544 aaKnown RBP13.39□□□□□ -0.27
SDC1-205ENST00000447124 COTL1Q14019 142 aa13.38□□□□□ -0.27
SDC1-205ENST00000447124 FAM231DQ6ZW35 169 aa13.38□□□□□ -0.27
SDC1-205ENST00000447124 RPL39LQ96EH5 51 aaKnown RBP13.38□□□□□ -0.27
SDC1-205ENST00000447124 PKHD1L1Q86WI1 4243 aa13.37□□□□□ -0.27
SDC1-205ENST00000447124 TRAV8-4A0A0B4J246 113 aa13.37□□□□□ -0.27
SDC1-205ENST00000447124 AMTP48728 403 aa13.37□□□□□ -0.27
SDC1-205ENST00000447124 FAT3Q8TDW7 4589 aa13.37□□□□□ -0.27
SDC1-205ENST00000447124 CEBPGP53567 150 aa13.35□□□□□ -0.27
SDC1-205ENST00000447124 SDIM1Q6ZPB5 146 aa13.35□□□□□ -0.27
SDC1-205ENST00000447124 CLRN3Q8NCR9 226 aa13.35□□□□□ -0.27
SDC1-205ENST00000447124 A8MWL6 223 aa13.34□□□□□ -0.27
SDC1-205ENST00000447124 PANO1I0J062 215 aa13.34□□□□□ -0.27
SDC1-205ENST00000447124 SLPIP03973 132 aa13.34□□□□□ -0.27
SDC1-205ENST00000447124 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.34□□□□□ -0.27
SDC1-205ENST00000447124 UBE2L6O14933 153 aa13.33□□□□□ -0.28
SDC1-205ENST00000447124 GAS8-AS1O95177 125 aa13.33□□□□□ -0.28
SDC1-205ENST00000447124 SMIM15Q7Z3B0 74 aa13.32□□□□□ -0.28
SDC1-205ENST00000447124 EIF5A2Q9GZV4 153 aaKnown RBP13.32□□□□□ -0.28
SDC1-205ENST00000447124 A0A1B0GVG6 124 aa13.31□□□□□ -0.28
SDC1-205ENST00000447124 KRTAP29-1A8MX34 341 aaPredicted RBP13.31□□□□□ -0.28
SDC1-205ENST00000447124 J3QL48 77 aa13.31□□□□□ -0.28
SDC1-205ENST00000447124 SRP19P09132 144 aaKnown RBP13.31□□□□□ -0.28
SDC1-205ENST00000447124 CT83Q5H943 113 aa13.31□□□□□ -0.28
SDC1-205ENST00000447124 LINC01551Q86U37 167 aa13.31□□□□□ -0.28
SDC1-205ENST00000447124 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.3□□□□□ -0.28
SDC1-205ENST00000447124 hDV102S1A0JD36 115 aa13.3□□□□□ -0.28
SDC1-205ENST00000447124 IGKV2-29A2NJV5 120 aaPredicted RBP13.3□□□□□ -0.28
SDC1-205ENST00000447124 FAM231BA6NCW3 169 aa13.3□□□□□ -0.28
SDC1-205ENST00000447124 SDHAF1A6NFY7 115 aa13.3□□□□□ -0.28
SDC1-205ENST00000447124 NDUFS6O75380 124 aaKnown RBP13.3□□□□□ -0.28
SDC1-205ENST00000447124 CNBPP62633 177 aaKnown RBP13.3□□□□□ -0.28
SDC1-205ENST00000447124 FAM210AQ96ND0 272 aa13.3□□□□□ -0.28
SDC1-205ENST00000447124 SMIM7Q9BQ49 75 aa13.3□□□□□ -0.28
SDC1-205ENST00000447124 NCR2O95944 276 aa13.29□□□□□ -0.28
SDC1-205ENST00000447124 TEX261Q6UWH6 196 aa13.29□□□□□ -0.28
SDC1-205ENST00000447124 IGKV3OR2-268A0A0C4DH90 116 aa13.28□□□□□ -0.28
SDC1-205ENST00000447124 GAGE12HA6NDE8 117 aa13.28□□□□□ -0.28
SDC1-205ENST00000447124 TSKUQ8WUA8 353 aa13.28□□□□□ -0.28
SDC1-205ENST00000447124 RNF185Q96GF1 192 aa13.28□□□□□ -0.28
SDC1-205ENST00000447124 TRBV6-5A0A0K0K1A5 114 aa13.27□□□□□ -0.29
SDC1-205ENST00000447124 ZNF727A8MUV8 499 aa13.27□□□□□ -0.29
SDC1-205ENST00000447124 HIGD1CA8MV81 97 aa13.27□□□□□ -0.29
SDC1-205ENST00000447124 OSTCQ9NRP0 149 aa13.27□□□□□ -0.29
SDC1-205ENST00000447124 APCSP02743 223 aa13.26□□□□□ -0.29
SDC1-205ENST00000447124 FGF6P10767 208 aa13.26□□□□□ -0.29
SDC1-205ENST00000447124 PMCHP20382 165 aa13.26□□□□□ -0.29
SDC1-205ENST00000447124 RNASEKQ6P5S7 137 aaKnown RBP13.26□□□□□ -0.29
SDC1-205ENST00000447124 C15orf56Q8N910 161 aa13.26□□□□□ -0.29
SDC1-205ENST00000447124 A0A1B0GUT8 65 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 H7C423 109 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 I3L3M4 83 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 ESDP10768 282 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 RAB4AP20338 218 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 CIRBPQ14011 172 aaKnown RBP13.25□□□□□ -0.29
SDC1-205ENST00000447124 AMMECR1LQ6DCA0 310 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 TMEM191AQ9H0A3 160 aa13.25□□□□□ -0.29
SDC1-205ENST00000447124 RPS10P46783 165 aaKnown RBP13.24□□□□□ -0.29
SDC1-205ENST00000447124 POLR2KP53803 58 aaKnown RBP13.24□□□□□ -0.29
SDC1-205ENST00000447124 CHCHD10Q8WYQ3 142 aaPredicted RBP13.24□□□□□ -0.29
SDC1-205ENST00000447124 AP5S1Q9NUS5 200 aa13.24□□□□□ -0.29
SDC1-205ENST00000447124 V9GYV3 84 aa13.24□□□□□ -0.29
SDC1-205ENST00000447124 C9JQL5 133 aa13.23□□□□□ -0.29
SDC1-205ENST00000447124 TSHBP01222 138 aa13.23□□□□□ -0.29
SDC1-205ENST00000447124 HNRNPA3P51991 378 aaKnown RBP13.23□□□□□ -0.29
SDC1-205ENST00000447124 RPL37AP61513 92 aaKnown RBP13.23□□□□□ -0.29
SDC1-205ENST00000447124 BORCS7Q96B45 105 aa13.23□□□□□ -0.29
SDC1-205ENST00000447124 ST20Q9HBF5 79 aa13.23□□□□□ -0.29
SDC1-205ENST00000447124 IGHV3-64A0A075B6Q5 118 aa13.22□□□□□ -0.29
SDC1-205ENST00000447124 CHTF8P0CG12 524 aa13.22□□□□□ -0.29
SDC1-205ENST00000447124 AMN1Q8IY45 258 aa13.22□□□□□ -0.29
SDC1-205ENST00000447124 NUP35Q8NFH5 326 aa13.22□□□□□ -0.29
SDC1-205ENST00000447124 CFAP161Q6P656 301 aa13.21□□□□□ -0.29
SDC1-205ENST00000447124 ISOC2Q96AB3 205 aa13.21□□□□□ -0.29
SDC1-205ENST00000447124 TMEM242Q9NWH2 141 aa13.21□□□□□ -0.29
SDC1-205ENST00000447124 RPL23P62829 140 aaKnown RBP13.2□□□□□ -0.3
SDC1-205ENST00000447124 FOXI1Q12951 378 aa13.2□□□□□ -0.3
SDC1-205ENST00000447124 TMEM241Q24JQ0 296 aa13.2□□□□□ -0.3
SDC1-205ENST00000447124 HIGD2BQ4VC39 106 aa13.2□□□□□ -0.3
SDC1-205ENST00000447124 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.19□□□□□ -0.3
SDC1-205ENST00000447124 SMKR1H3BMG3 65 aa13.19□□□□□ -0.3
SDC1-205ENST00000447124 SRSF3P84103 164 aaKnown RBP13.19□□□□□ -0.3
SDC1-205ENST00000447124 OR5A1Q8NGJ0 315 aa13.19□□□□□ -0.3
SDC1-205ENST00000447124 MRAP2Q96G30 205 aa13.19□□□□□ -0.3
SDC1-205ENST00000447124 A0A087WYN8 130 aa13.18□□□□□ -0.3
SDC1-205ENST00000447124 TRBV27A0A0K0K1C4 114 aa13.18□□□□□ -0.3
SDC1-205ENST00000447124 ZNF25P17030 456 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms