RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 SFTA2Q6UW10 78 aa12.04□□□□□ -0.48
CLCNKA-203ENST00000439316 RHODO00212 210 aa12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 HOXD3P31249 432 aaPredicted RBP12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 FOXI1Q12951 378 aa12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 HIVEP2P31629 2446 aa12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 ELANEP08246 267 aa12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 RBMY1A1P0DJD3 496 aaKnown RBP12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 RBMY1CP0DJD4 496 aa12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 SMAGPQ0VAQ4 97 aa12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 RBMY1FQ15415 496 aaKnown RBP12.03□□□□□ -0.48
CLCNKA-203ENST00000439316 TRBV20-1A0A075B6N2 111 aa12.02□□□□□ -0.49
CLCNKA-203ENST00000439316 TCL1BO95988 128 aa12.02□□□□□ -0.49
CLCNKA-203ENST00000439316 PRO1854Q9UHT4 67 aa12.02□□□□□ -0.49
CLCNKA-203ENST00000439316 A0A0J9YXV3 536 aa12.01□□□□□ -0.49
CLCNKA-203ENST00000439316 SBSPONQ8IVN8 264 aa12.01□□□□□ -0.49
CLCNKA-203ENST00000439316 UBE2E2Q96LR5 201 aa12.01□□□□□ -0.49
CLCNKA-203ENST00000439316 SMR3AQ99954 134 aa12.01□□□□□ -0.49
CLCNKA-203ENST00000439316 VCX2Q9H322 139 aa12.01□□□□□ -0.49
CLCNKA-203ENST00000439316 ZNF702PQ9H963 129 aa12.01□□□□□ -0.49
CLCNKA-203ENST00000439316 A8MTW9 85 aa12□□□□□ -0.49
CLCNKA-203ENST00000439316 ZNF418Q8TF45 676 aaPredicted RBP12□□□□□ -0.49
CLCNKA-203ENST00000439316 PYGO1Q9Y3Y4 419 aa12□□□□□ -0.49
CLCNKA-203ENST00000439316 EIF4EBP3O60516 100 aaPredicted RBP11.99□□□□□ -0.49
CLCNKA-203ENST00000439316 A4D1N5 150 aa11.99□□□□□ -0.49
CLCNKA-203ENST00000439316 TCTEX1D4Q5JR98 221 aa11.99□□□□□ -0.49
CLCNKA-203ENST00000439316 FAM104AQ969W3 186 aa11.99□□□□□ -0.49
CLCNKA-203ENST00000439316 SETD2Q9BYW2 2564 aaPredicted RBP11.99□□□□□ -0.49
CLCNKA-203ENST00000439316 HIVEP1P15822 2718 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 A0A0B4J2C4 111 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 KNCNA6PVL3 124 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 TMEM263Q8WUH6 116 aaKnown RBP11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 IGHV3-64A0A075B6Q5 118 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 M0R2P5 195 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 CRYBA4P53673 196 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 TEN1Q86WV5 123 aa11.98□□□□□ -0.49
CLCNKA-203ENST00000439316 IGHV3-33P01772 117 aa11.97□□□□□ -0.49
CLCNKA-203ENST00000439316 CD28P10747 220 aa11.97□□□□□ -0.49
CLCNKA-203ENST00000439316 PPDPFLQ8WWR9 84 aa11.97□□□□□ -0.49
CLCNKA-203ENST00000439316 PTH2Q96A98 100 aa11.97□□□□□ -0.49
CLCNKA-203ENST00000439316 TRAV2A0A0B4J234 112 aa11.96□□□□□ -0.49
CLCNKA-203ENST00000439316 MRPS36P82909 103 aaKnown RBP11.96□□□□□ -0.49
CLCNKA-203ENST00000439316 TMEM86BQ8N661 226 aa11.96□□□□□ -0.49
CLCNKA-203ENST00000439316 CDIP1Q9H305 208 aa11.96□□□□□ -0.49
CLCNKA-203ENST00000439316 IGHV3-73A0A0B4J1V6 119 aa11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 RBMY1BA6NDE4 496 aaKnown RBP11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 RBMY1EA6NEQ0 496 aaKnown RBP11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 RBMY1DP0C7P1 496 aaKnown RBP11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 PROK1P58294 105 aa11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 DEFB131AP59861 70 aa11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 PIK3CD-AS1Q5SR53 167 aa11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 MUSTN1Q8IVN3 82 aa11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 CARD19Q96LW7 228 aa11.96□□□□□ -0.5
CLCNKA-203ENST00000439316 A0A0J9YXY3 114 aa11.95□□□□□ -0.5
CLCNKA-203ENST00000439316 DNAJC9-AS1A6NH13 148 aa11.95□□□□□ -0.5
CLCNKA-203ENST00000439316 A8MWV9 139 aa11.95□□□□□ -0.5
CLCNKA-203ENST00000439316 H3BMM0 161 aa11.95□□□□□ -0.5
CLCNKA-203ENST00000439316 NSD1Q96L73 2696 aaPredicted RBP11.95□□□□□ -0.5
CLCNKA-203ENST00000439316 SCGB1C2P0DMR2 95 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 IGHV3-30-3P0DP02 117 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 SLURP1P55000 103 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 ESM1Q9NQ30 184 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 LY6G6DO95868 133 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 FHL3Q13643 280 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 TIMM21Q9BVV7 248 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 TNFRSF18Q9Y5U5 241 aa11.94□□□□□ -0.5
CLCNKA-203ENST00000439316 HTN1P15515 57 aa11.93□□□□□ -0.5
CLCNKA-203ENST00000439316 C18orf65Q6ZTR6 163 aa11.93□□□□□ -0.5
CLCNKA-203ENST00000439316 RAX2Q96IS3 184 aa11.93□□□□□ -0.5
CLCNKA-203ENST00000439316 DUX3Q96PT4 197 aa11.93□□□□□ -0.5
CLCNKA-203ENST00000439316 LITAFQ99732 161 aa11.93□□□□□ -0.5
CLCNKA-203ENST00000439316 ERG28Q9UKR5 140 aa11.93□□□□□ -0.5
CLCNKA-203ENST00000439316 M0QXV9 152 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 ZNF415Q09FC8 603 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 Q8N2B8 174 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 SPXQ9BT56 116 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 CHCHD7Q9BUK0 85 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 BAHCC1Q9P281 2608 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 DEFB136Q30KP8 78 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 CEMP1Q6PRD7 247 aaPredicted RBP11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 ANKRD29Q8N6D5 301 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 NACAE9PAV3 2078 aa11.92□□□□□ -0.5
CLCNKA-203ENST00000439316 SETXQ7Z333 2677 aaKnown RBP11.91□□□□□ -0.5
CLCNKA-203ENST00000439316 SORL1Q92673 2214 aa11.91□□□□□ -0.5
CLCNKA-203ENST00000439316 IGHV1-58A0A0C4DH39 117 aa11.91□□□□□ -0.5
CLCNKA-203ENST00000439316 Q6ZSN1 163 aa11.91□□□□□ -0.5
CLCNKA-203ENST00000439316 SPANXA1Q9NS26 97 aa11.91□□□□□ -0.5
CLCNKA-203ENST00000439316 Q9UF83 564 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 UBE2D4Q9Y2X8 147 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 TRAV8-3A0A0A6YYJ7 113 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 TINCRA0A1B0GVN0 87 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 PRM2P04554 102 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 TMEM61Q8N0U2 210 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 LINC00467Q9BRT7 94 aa11.9□□□□□ -0.5
CLCNKA-203ENST00000439316 ADARB2-AS1A8MUL3 147 aa11.89□□□□□ -0.51
CLCNKA-203ENST00000439316 SLC25A20O43772 301 aa11.89□□□□□ -0.51
CLCNKA-203ENST00000439316 RNASE13Q5GAN3 156 aaKnown RBP11.89□□□□□ -0.51
CLCNKA-203ENST00000439316 C11orf72Q8NBR9 251 aa11.89□□□□□ -0.51
CLCNKA-203ENST00000439316 Q6ZSV7 163 aa11.88□□□□□ -0.51
CLCNKA-203ENST00000439316 SPANXDQ9BXN6 97 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms