RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 VWFP04275 2813 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 NOTCH3Q9UM47 2321 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 IGHV3-73A0A0B4J1V6 119 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 IGIPA6NJ69 53 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 ODF3Q96PU9 254 aa7.87□□□□□ -1.15
CUX1-205ENST00000425244 TRAV25A0A0B4J276 109 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 LGALS9O00182 355 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 PMVKQ15126 192 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 TAL2Q16559 108 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 TMEM170BQ5T4T1 132 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 PLEKHB2Q96CS7 222 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 OPRPNQ99935 248 aaPredicted RBP7.86□□□□□ -1.15
CUX1-205ENST00000425244 IGLV4-69A0A075B6H9 119 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 TRBV7-3A0A075B6L6 115 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 IGLL5B9A064 214 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 M0QY20 66 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 DEFB131AP59861 70 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 WFDC2Q14508 124 aa7.86□□□□□ -1.15
CUX1-205ENST00000425244 CRLF1O75462 422 aa7.85□□□□□ -1.15
CUX1-205ENST00000425244 PRM2P04554 102 aa7.85□□□□□ -1.15
CUX1-205ENST00000425244 SRSF9Q13242 221 aaKnown RBP eCLIP7.85□□□□□ -1.15
CUX1-205ENST00000425244 MORN3Q6PF18 240 aaPredicted RBP7.85□□□□□ -1.15
CUX1-205ENST00000425244 C1QTNF4Q9BXJ3 329 aa7.85□□□□□ -1.15
CUX1-205ENST00000425244 TRBV27A0A0K0K1C4 114 aa7.85□□□□□ -1.15
CUX1-205ENST00000425244 F8W1H4 67 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 HERVK_113P61574 105 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 TMEM141Q96I45 108 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 MT-ATP8P03928 68 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 RBMY1A1P0DJD3 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-205ENST00000425244 RBMY1CP0DJD4 496 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 RBMY1FQ15415 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-205ENST00000425244 NSUN5P1Q3KNT7 163 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 AMTNQ6UX39 209 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 SH2D6Q7Z4S9 175 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 TRPT1Q86TN4 253 aaKnown RBP7.84□□□□□ -1.15
CUX1-205ENST00000425244 CDIP1Q9H305 208 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 TRRAPQ9Y4A5 3859 aa7.84□□□□□ -1.15
CUX1-205ENST00000425244 TRGV11A0A075B6L2 103 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 ETDBQ3ZM63 59 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 TIMM17AQ99595 171 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 FBN1P35555 2871 aaKnown RBP7.83□□□□□ -1.16
CUX1-205ENST00000425244 TRBV6-5A0A0K0K1A5 114 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 SFTA2Q6UW10 78 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 RNF152Q8N8N0 203 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 ZNRF2Q8NHG8 242 aa7.83□□□□□ -1.16
CUX1-205ENST00000425244 M0QXV9 152 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 P0DMU3 169 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 FAM231AP0DMU4 169 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 FAM231CP0DMU5 169 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 INSL3P51460 131 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 PAPPA-AS1Q5QFB9 102 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 LINC01619G3V211 115 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 H3BMG7 143 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 WIPF1O43516 503 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 PROK1P58294 105 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 RRN3P1Q2M238 152 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 TMEM61Q8N0U2 210 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 C4orf3Q8WVX3 66 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 IGHV3-64A0A075B6Q5 118 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 LINC01549A6NIU2 74 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 TSPEAR-AS2P59090 65 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 DYNLRB2Q8TF09 96 aa7.82□□□□□ -1.16
CUX1-205ENST00000425244 DLX4Q92988 240 aaPredicted RBP7.82□□□□□ -1.16
CUX1-205ENST00000425244 Q6ZUT4 128 aa7.81□□□□□ -1.16
CUX1-205ENST00000425244 C16orf95Q9H693 158 aa7.81□□□□□ -1.16
CUX1-205ENST00000425244 RBMY1BA6NDE4 496 aaKnown RBP7.81□□□□□ -1.16
CUX1-205ENST00000425244 RBMY1EA6NEQ0 496 aaKnown RBP7.81□□□□□ -1.16
CUX1-205ENST00000425244 I3L3M4 83 aa7.81□□□□□ -1.16
CUX1-205ENST00000425244 APOMO95445 188 aa7.81□□□□□ -1.16
CUX1-205ENST00000425244 RBMY1DP0C7P1 496 aaKnown RBP7.81□□□□□ -1.16
CUX1-205ENST00000425244 NHLRC4P0CG21 123 aaPredicted RBP7.81□□□□□ -1.16
CUX1-205ENST00000425244 C5orf47Q569G3 176 aa7.81□□□□□ -1.16
CUX1-205ENST00000425244 H3BMM0 161 aa7.8□□□□□ -1.16
CUX1-205ENST00000425244 XGP55808 180 aa7.8□□□□□ -1.16
CUX1-205ENST00000425244 RHOHQ15669 191 aa7.8□□□□□ -1.16
CUX1-205ENST00000425244 CCL24O00175 119 aa7.8□□□□□ -1.16
CUX1-205ENST00000425244 LGALS3P17931 250 aaKnown RBP7.8□□□□□ -1.16
CUX1-205ENST00000425244 C20orf203Q8NBC4 194 aa7.8□□□□□ -1.16
CUX1-205ENST00000425244 PPDPFQ9H3Y8 114 aa7.79□□□□□ -1.16
CUX1-205ENST00000425244 PEMTQ9UBM1 199 aa7.79□□□□□ -1.16
CUX1-205ENST00000425244 A0A0J9YY99 117 aa7.79□□□□□ -1.16
CUX1-205ENST00000425244 KRTAP10-3P60369 221 aa7.79□□□□□ -1.16
CUX1-205ENST00000425244 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.79□□□□□ -1.16
CUX1-205ENST00000425244 A0A1B0GWB2 263 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 GAGE12JA6NER3 117 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 J3QQQ9 107 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 GAGE7O76087 117 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 GAGE12FP0CL80 117 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 GAGE12GP0CL81 117 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 GAGE12IP0CL82 117 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 GAGE4Q13068 117 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 RNASE13Q5GAN3 156 aaKnown RBP7.78□□□□□ -1.16
CUX1-205ENST00000425244 LINC01587Q99440 93 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 Q9UF83 564 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 LOC107984156A0A0G2JMH3 177 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 A0A0J9YXV3 536 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 NDUFA7O95182 113 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 CEMP1Q6PRD7 247 aaPredicted RBP7.78□□□□□ -1.16
CUX1-205ENST00000425244 ARL17AQ8IVW1 177 aa7.78□□□□□ -1.16
CUX1-205ENST00000425244 MAP6D1Q9H9H5 199 aa7.77□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms