RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 Q8N3U1 123 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 SMIM2Q9BVW6 85 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 LAMTOR2Q9Y2Q5 125 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 TRAPPC1Q9Y5R8 145 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 TRBV25-1A0A075B6N4 114 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 COLCA2A8K830 154 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 VCYO14598 125 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 AMTP48728 403 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 NIT1Q86X76 327 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 ALKBH7Q9BT30 221 aaPredicted RBP8.23□□□□□ -1.09
LINC00539-202ENST00000423575 TMEM243Q9BU79 118 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 KRTAP1-5Q9BYS1 174 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 DNAH2Q9P225 4427 aa8.23□□□□□ -1.09
LINC00539-202ENST00000423575 NBDYA0A0U1RRE5 68 aa8.22□□□□□ -1.09
LINC00539-202ENST00000423575 M0R2N4 97 aa8.22□□□□□ -1.09
LINC00539-202ENST00000423575 LINC01556Q5JQF7 62 aa8.22□□□□□ -1.09
LINC00539-202ENST00000423575 CHCHD5Q9BSY4 110 aa8.22□□□□□ -1.09
LINC00539-202ENST00000423575 LOC389332A0A1B0GUA5 103 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 PRSS47A8MTI9 375 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 IGHV3-30P01768 117 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 IGHV3-33P01772 117 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 IGHV3-30-3P0DP02 117 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 IGHV3-30-5P0DP03 117 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 GAGE6Q13070 117 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 Q6ZR54 194 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 CHCHD7Q9BUK0 85 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 MAP1LC3AQ9H492 121 aa8.21□□□□□ -1.1
LINC00539-202ENST00000423575 ESDP10768 282 aa8.2□□□□□ -1.1
LINC00539-202ENST00000423575 RAB5AP20339 215 aa8.2□□□□□ -1.1
LINC00539-202ENST00000423575 FCER1GP30273 86 aa8.2□□□□□ -1.1
LINC00539-202ENST00000423575 MPV17L2Q567V2 206 aa8.2□□□□□ -1.1
LINC00539-202ENST00000423575 TTC32Q5I0X7 151 aa8.2□□□□□ -1.1
LINC00539-202ENST00000423575 KIR2DL4Q99706 377 aa8.2□□□□□ -1.1
LINC00539-202ENST00000423575 DNAH10Q8IVF4 4471 aa8.19□□□□□ -1.1
LINC00539-202ENST00000423575 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.19□□□□□ -1.1
LINC00539-202ENST00000423575 IGKV2-29A2NJV5 120 aaPredicted RBP8.19□□□□□ -1.1
LINC00539-202ENST00000423575 TMEM262E9PQX1 116 aa8.19□□□□□ -1.1
LINC00539-202ENST00000423575 TCAPO15273 167 aa8.19□□□□□ -1.1
LINC00539-202ENST00000423575 Q8N8P6 123 aa8.19□□□□□ -1.1
LINC00539-202ENST00000423575 A0A087WX48 190 aa8.18□□□□□ -1.1
LINC00539-202ENST00000423575 TRGC2P03986 189 aa8.18□□□□□ -1.1
LINC00539-202ENST00000423575 PKIAP61925 76 aa8.18□□□□□ -1.1
LINC00539-202ENST00000423575 RBX1P62877 108 aa8.18□□□□□ -1.1
LINC00539-202ENST00000423575 Q8N976 141 aa8.18□□□□□ -1.1
LINC00539-202ENST00000423575 NXT2Q9NPJ8 142 aaKnown RBP8.18□□□□□ -1.1
LINC00539-202ENST00000423575 UBE2L6O14933 153 aa8.17□□□□□ -1.1
LINC00539-202ENST00000423575 IFI27P40305 119 aaPredicted RBP8.17□□□□□ -1.1
LINC00539-202ENST00000423575 C10orf126Q8N4M7 172 aa8.17□□□□□ -1.1
LINC00539-202ENST00000423575 C18orf32Q8TCD1 76 aa8.17□□□□□ -1.1
LINC00539-202ENST00000423575 DNAH17Q9UFH2 4485 aa8.17□□□□□ -1.1
LINC00539-202ENST00000423575 IGLV4-60A0A075B6I1 120 aa8.16□□□□□ -1.1
LINC00539-202ENST00000423575 TRAV9-2A0A087WT02 112 aa8.16□□□□□ -1.1
LINC00539-202ENST00000423575 K7EP13 123 aa8.16□□□□□ -1.1
LINC00539-202ENST00000423575 FGF6P10767 208 aa8.16□□□□□ -1.1
LINC00539-202ENST00000423575 C20orf203Q8NBC4 194 aa8.16□□□□□ -1.1
LINC00539-202ENST00000423575 IBA57-AS1B1ANH7 110 aa8.15□□□□□ -1.1
LINC00539-202ENST00000423575 H7C423 109 aa8.15□□□□□ -1.1
LINC00539-202ENST00000423575 RPL39P62891 51 aaKnown RBP8.15□□□□□ -1.1
LINC00539-202ENST00000423575 PRSS3P2Q8NHM4 247 aa8.15□□□□□ -1.1
LINC00539-202ENST00000423575 KLK12Q9UKR0 248 aa8.15□□□□□ -1.1
LINC00539-202ENST00000423575 A0A1B0GUV1 79 aa8.14□□□□□ -1.11
LINC00539-202ENST00000423575 ANGP03950 147 aaKnown RBP8.14□□□□□ -1.11
LINC00539-202ENST00000423575 AMMECR1LQ6DCA0 310 aa8.14□□□□□ -1.11
LINC00539-202ENST00000423575 RNASEKQ6P5S7 137 aaKnown RBP8.14□□□□□ -1.11
LINC00539-202ENST00000423575 MRPL52Q86TS9 123 aaKnown RBP8.14□□□□□ -1.11
LINC00539-202ENST00000423575 URB1-AS1Q96HZ7 61 aa8.14□□□□□ -1.11
LINC00539-202ENST00000423575 LINC01546A6NGU7 62 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 K7EMI3 77 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 LAGE3Q14657 143 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 ORMDL2Q53FV1 153 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 C1orf134Q5TEV5 83 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 CLPSL2Q6UWE3 100 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 FA2HQ7L5A8 372 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 C6orf223Q8N319 242 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 Q9HAA7 133 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 UBE2D4Q9Y2X8 147 aa8.13□□□□□ -1.11
LINC00539-202ENST00000423575 ZNF25P17030 456 aaPredicted RBP8.12□□□□□ -1.11
LINC00539-202ENST00000423575 ENHOQ6UWT2 76 aa8.12□□□□□ -1.11
LINC00539-202ENST00000423575 LINC00269Q8N2A0 174 aa8.12□□□□□ -1.11
LINC00539-202ENST00000423575 UBE2WQ96B02 151 aa8.12□□□□□ -1.11
LINC00539-202ENST00000423575 TMEM18Q96B42 140 aa8.12□□□□□ -1.11
LINC00539-202ENST00000423575 PRR34Q9NV39 138 aa8.12□□□□□ -1.11
LINC00539-202ENST00000423575 RTL8CO15255 209 aa8.11□□□□□ -1.11
LINC00539-202ENST00000423575 BTF3P20290 206 aaKnown RBP8.11□□□□□ -1.11
LINC00539-202ENST00000423575 C2orf66Q6UXQ4 117 aa8.11□□□□□ -1.11
LINC00539-202ENST00000423575 Q6ZRN7 208 aaPredicted RBP8.11□□□□□ -1.11
LINC00539-202ENST00000423575 OR5A1Q8NGJ0 315 aa8.11□□□□□ -1.11
LINC00539-202ENST00000423575 TMEM101Q96IK0 257 aa8.11□□□□□ -1.11
LINC00539-202ENST00000423575 TIMM21Q9BVV7 248 aa8.11□□□□□ -1.11
LINC00539-202ENST00000423575 FAT2Q9NYQ8 4349 aa8.11□□□□□ -1.11
LINC00539-202ENST00000423575 CRPP02741 224 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 Q6ZUT4 128 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 FAM104AQ969W3 186 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 CDC42SE2Q9NRR3 84 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 SPANXA1Q9NS26 97 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 AP5S1Q9NUS5 200 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 CYSLTR1Q9Y271 337 aa8.1□□□□□ -1.11
LINC00539-202ENST00000423575 CSDC2Q9Y534 153 aaKnown RBP8.1□□□□□ -1.11
LINC00539-202ENST00000423575 TRAV8-3A0A0A6YYJ7 113 aa8.09□□□□□ -1.11
LINC00539-202ENST00000423575 LINC00614P0C842 121 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms