RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DEFB131BA0A096LNP1 70 aa12.03□□□□□ -0.48
CCDC28B-202ENST00000421922 TRAV10A0A0B4J240 114 aa12.03□□□□□ -0.48
CCDC28B-202ENST00000421922 DEFB104AQ8WTQ1 72 aa12.03□□□□□ -0.48
CCDC28B-202ENST00000421922 HIST1H2BLQ99880 126 aa12.03□□□□□ -0.48
CCDC28B-202ENST00000421922 ICOSQ9Y6W8 199 aa12.03□□□□□ -0.48
CCDC28B-202ENST00000421922 LEPROTL1O95214 131 aa12.02□□□□□ -0.49
CCDC28B-202ENST00000421922 TSHBP01222 138 aa12.02□□□□□ -0.49
CCDC28B-202ENST00000421922 AKR1D1P51857 326 aa12.02□□□□□ -0.49
CCDC28B-202ENST00000421922 PACRGQ96M98 296 aaPredicted RBP12.02□□□□□ -0.49
CCDC28B-202ENST00000421922 TMEM97Q5BJF2 176 aa12.01□□□□□ -0.49
CCDC28B-202ENST00000421922 ATP6V0E2Q8NHE4 81 aa12.01□□□□□ -0.49
CCDC28B-202ENST00000421922 HSPB8Q9UJY1 196 aa12.01□□□□□ -0.49
CCDC28B-202ENST00000421922 LINC01549A6NIU2 74 aa12□□□□□ -0.49
CCDC28B-202ENST00000421922 MRPL23Q16540 153 aaKnown RBP12□□□□□ -0.49
CCDC28B-202ENST00000421922 SH2D6Q7Z4S9 175 aa12□□□□□ -0.49
CCDC28B-202ENST00000421922 VSIG2Q96IQ7 327 aa12□□□□□ -0.49
CCDC28B-202ENST00000421922 CYSLTR1Q9Y271 337 aa12□□□□□ -0.49
CCDC28B-202ENST00000421922 LINC00694P0DN24 101 aa11.98□□□□□ -0.49
CCDC28B-202ENST00000421922 C2orf66Q6UXQ4 117 aa11.98□□□□□ -0.49
CCDC28B-202ENST00000421922 OR10D4PQ8NGN7 298 aa11.98□□□□□ -0.49
CCDC28B-202ENST00000421922 IFITM10A6NMD0 228 aa11.97□□□□□ -0.49
CCDC28B-202ENST00000421922 H3BNG1 76 aa11.97□□□□□ -0.49
CCDC28B-202ENST00000421922 TRBV25-1A0A075B6N4 114 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 A0A096LPF7 62 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 LOC105371267A0A1B0GV96 52 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 UBE2L6O14933 153 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 ATP5LO75964 103 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 TOMM6Q96B49 74 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 GTSF1LQ9H1H1 148 aa11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 KMT2CQ8NEZ4 4911 aaKnown RBP11.96□□□□□ -0.49
CCDC28B-202ENST00000421922 A0A096LNJ9 63 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 KRTDAPP60985 99 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 SMAGPQ0VAQ4 97 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 C20orf203Q8NBC4 194 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 SCGB3A1Q96QR1 104 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 TMEM243Q9BU79 118 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 MAP1LC3CQ9BXW4 147 aa11.95□□□□□ -0.5
CCDC28B-202ENST00000421922 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.94□□□□□ -0.5
CCDC28B-202ENST00000421922 IFI27L1Q96BM0 104 aa11.94□□□□□ -0.5
CCDC28B-202ENST00000421922 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.93□□□□□ -0.5
CCDC28B-202ENST00000421922 TRBV6-8A0A0A6YYG3 113 aa11.93□□□□□ -0.5
CCDC28B-202ENST00000421922 IGKV2-29A2NJV5 120 aaPredicted RBP11.93□□□□□ -0.5
CCDC28B-202ENST00000421922 RPL39P62891 51 aaKnown RBP11.93□□□□□ -0.5
CCDC28B-202ENST00000421922 Q6ZN92 141 aa11.93□□□□□ -0.5
CCDC28B-202ENST00000421922 CHCHD7Q9BUK0 85 aa11.93□□□□□ -0.5
CCDC28B-202ENST00000421922 H0Y8G0 127 aa11.92□□□□□ -0.5
CCDC28B-202ENST00000421922 AMMECR1LQ6DCA0 310 aa11.92□□□□□ -0.5
CCDC28B-202ENST00000421922 C15orf53Q8NAA6 179 aa11.92□□□□□ -0.5
CCDC28B-202ENST00000421922 CHCHD5Q9BSY4 110 aa11.92□□□□□ -0.5
CCDC28B-202ENST00000421922 HUWE1Q7Z6Z7 4374 aaKnown RBP11.92□□□□□ -0.5
CCDC28B-202ENST00000421922 STAB2Q8WWQ8 2551 aa11.91□□□□□ -0.5
CCDC28B-202ENST00000421922 DGAT2L7PQ6IED9 249 aa11.91□□□□□ -0.5
CCDC28B-202ENST00000421922 NTM-AS1Q6ZSK4 140 aa11.91□□□□□ -0.5
CCDC28B-202ENST00000421922 LINC00173Q6ZV60 143 aa11.91□□□□□ -0.5
CCDC28B-202ENST00000421922 ERASQ7Z444 233 aa11.91□□□□□ -0.5
CCDC28B-202ENST00000421922 C20orf202A1L168 122 aa11.9□□□□□ -0.5
CCDC28B-202ENST00000421922 PRSS1P07477 247 aa11.9□□□□□ -0.5
CCDC28B-202ENST00000421922 C3orf79P0CE67 100 aa11.9□□□□□ -0.5
CCDC28B-202ENST00000421922 TMEM141Q96I45 108 aa11.9□□□□□ -0.5
CCDC28B-202ENST00000421922 SPANXA1Q9NS26 97 aa11.9□□□□□ -0.5
CCDC28B-202ENST00000421922 IGLL5B9A064 214 aa11.89□□□□□ -0.51
CCDC28B-202ENST00000421922 PAPPA-AS1Q5QFB9 102 aa11.89□□□□□ -0.51
CCDC28B-202ENST00000421922 TMEM101Q96IK0 257 aa11.89□□□□□ -0.51
CCDC28B-202ENST00000421922 TIMM17AQ99595 171 aa11.89□□□□□ -0.51
CCDC28B-202ENST00000421922 DNAH9Q9NYC9 4486 aa11.89□□□□□ -0.51
CCDC28B-202ENST00000421922 RYR3Q15413 4870 aa11.88□□□□□ -0.51
CCDC28B-202ENST00000421922 H7C423 109 aa11.88□□□□□ -0.51
CCDC28B-202ENST00000421922 SCGB1D1O95968 90 aa11.88□□□□□ -0.51
CCDC28B-202ENST00000421922 COL7A1Q02388 2944 aa11.88□□□□□ -0.51
CCDC28B-202ENST00000421922 SYS1-DBNDD2H3BUS1 97 aa11.87□□□□□ -0.51
CCDC28B-202ENST00000421922 GAGE6Q13070 117 aa11.87□□□□□ -0.51
CCDC28B-202ENST00000421922 PET117Q6UWS5 81 aa11.87□□□□□ -0.51
CCDC28B-202ENST00000421922 TMEM262E9PQX1 116 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 FGF6P10767 208 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 PKIAP61925 76 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 LELP1Q5T871 98 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 TIMM21Q9BVV7 248 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 PYGO1Q9Y3Y4 419 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 TRAV8-6A0A0B4J262 113 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 NUPR2A6NF83 97 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 TIRAPP58753 221 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 OR5A1Q8NGJ0 315 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 UBE2D4Q9Y2X8 147 aa11.86□□□□□ -0.51
CCDC28B-202ENST00000421922 IGIPA6NJ69 53 aa11.85□□□□□ -0.51
CCDC28B-202ENST00000421922 NPSP0C0P6 89 aa11.85□□□□□ -0.51
CCDC28B-202ENST00000421922 ZNF25P17030 456 aaPredicted RBP11.85□□□□□ -0.51
CCDC28B-202ENST00000421922 LYPD5Q6UWN5 251 aa11.85□□□□□ -0.51
CCDC28B-202ENST00000421922 KLK5Q9Y337 293 aaPredicted RBP11.85□□□□□ -0.51
CCDC28B-202ENST00000421922 MRPL52Q86TS9 123 aaKnown RBP11.84□□□□□ -0.51
CCDC28B-202ENST00000421922 BAALCQ8WXS3 180 aa11.84□□□□□ -0.51
CCDC28B-202ENST00000421922 VCX2Q9H322 139 aa11.84□□□□□ -0.51
CCDC28B-202ENST00000421922 IGLV4-3A0A075B6K6 122 aa11.83□□□□□ -0.52
CCDC28B-202ENST00000421922 JOSD1Q15040 202 aaPredicted RBP11.83□□□□□ -0.52
CCDC28B-202ENST00000421922 PMVKQ15126 192 aa11.83□□□□□ -0.52
CCDC28B-202ENST00000421922 CEMP1Q6PRD7 247 aaPredicted RBP11.83□□□□□ -0.52
CCDC28B-202ENST00000421922 TEX43Q6ZNM6 134 aa11.83□□□□□ -0.52
CCDC28B-202ENST00000421922 C2orf88Q9BSF0 95 aa11.83□□□□□ -0.52
CCDC28B-202ENST00000421922 A0A087WX48 190 aa11.82□□□□□ -0.52
CCDC28B-202ENST00000421922 SMIM6P0DI80 62 aa11.82□□□□□ -0.52
CCDC28B-202ENST00000421922 SPATA12Q7Z6I5 190 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms