RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 AP5S1Q9NUS5 200 aa9.87□□□□□ -0.83
SF3B1-204ENST00000414963 IGLL5B9A064 214 aa9.86□□□□□ -0.83
SF3B1-204ENST00000414963 FCER1GP30273 86 aa9.86□□□□□ -0.83
SF3B1-204ENST00000414963 TCTAP57738 103 aa9.86□□□□□ -0.83
SF3B1-204ENST00000414963 ORMDL2Q53FV1 153 aa9.86□□□□□ -0.83
SF3B1-204ENST00000414963 KLK5Q9Y337 293 aaPredicted RBP9.86□□□□□ -0.83
SF3B1-204ENST00000414963 TRBV6-8A0A0A6YYG3 113 aa9.85□□□□□ -0.83
SF3B1-204ENST00000414963 NUPR1O60356 82 aa9.85□□□□□ -0.83
SF3B1-204ENST00000414963 NUDT3O95989 172 aa9.85□□□□□ -0.83
SF3B1-204ENST00000414963 RNASEKQ6P5S7 137 aaKnown RBP9.85□□□□□ -0.83
SF3B1-204ENST00000414963 LYPD5Q6UWN5 251 aa9.85□□□□□ -0.83
SF3B1-204ENST00000414963 MUC7Q8TAX7 377 aa9.85□□□□□ -0.83
SF3B1-204ENST00000414963 DYNC2H1Q8NCM8 4307 aaKnown RBP9.84□□□□□ -0.83
SF3B1-204ENST00000414963 S100A6P06703 90 aa9.84□□□□□ -0.83
SF3B1-204ENST00000414963 G0S2P27469 103 aa9.84□□□□□ -0.83
SF3B1-204ENST00000414963 CHCHD7Q9BUK0 85 aa9.84□□□□□ -0.83
SF3B1-204ENST00000414963 APLNQ9ULZ1 77 aa9.84□□□□□ -0.83
SF3B1-204ENST00000414963 DNAH7Q8WXX0 4024 aa9.84□□□□□ -0.83
SF3B1-204ENST00000414963 IGHV1-24A0A0C4DH33 117 aa9.83□□□□□ -0.84
SF3B1-204ENST00000414963 HSBP1O75506 76 aa9.83□□□□□ -0.84
SF3B1-204ENST00000414963 TRBV25-1A0A075B6N4 114 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 C5orf52A6NGY3 159 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 H7C423 109 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 AMTP48728 403 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 ESRGQ1W209 222 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 LELP1Q5T871 98 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 C20orf203Q8NBC4 194 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 DEFB104AQ8WTQ1 72 aa9.82□□□□□ -0.84
SF3B1-204ENST00000414963 TMA7Q9Y2S6 64 aaKnown RBP9.82□□□□□ -0.84
SF3B1-204ENST00000414963 A0A096LNJ9 63 aa9.81□□□□□ -0.84
SF3B1-204ENST00000414963 LINC01549A6NIU2 74 aa9.81□□□□□ -0.84
SF3B1-204ENST00000414963 PACRGQ96M98 296 aaPredicted RBP9.81□□□□□ -0.84
SF3B1-204ENST00000414963 TMEM243Q9BU79 118 aa9.81□□□□□ -0.84
SF3B1-204ENST00000414963 HBDP02042 147 aa9.8□□□□□ -0.84
SF3B1-204ENST00000414963 TOMM6Q96B49 74 aa9.8□□□□□ -0.84
SF3B1-204ENST00000414963 SNRPEP62304 92 aaKnown RBP9.79□□□□□ -0.84
SF3B1-204ENST00000414963 PMCHL1Q16048 86 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 PDZD11Q5EBL8 140 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 C2orf66Q6UXQ4 117 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 HIST3H2BBQ8N257 126 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 FAM19A2Q8N3H0 131 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 TMEM18Q96B42 140 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 TIMM21Q9BVV7 248 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 CYSLTR1Q9Y271 337 aa9.79□□□□□ -0.84
SF3B1-204ENST00000414963 C3orf84H3BNL1 204 aa9.78□□□□□ -0.84
SF3B1-204ENST00000414963 BTF3P20290 206 aaKnown RBP9.78□□□□□ -0.84
SF3B1-204ENST00000414963 CCL18P55774 89 aa9.78□□□□□ -0.84
SF3B1-204ENST00000414963 ZFAND6Q6FIF0 208 aa9.78□□□□□ -0.84
SF3B1-204ENST00000414963 MRPL52Q86TS9 123 aaKnown RBP9.78□□□□□ -0.84
SF3B1-204ENST00000414963 PYGO1Q9Y3Y4 419 aa9.78□□□□□ -0.84
SF3B1-204ENST00000414963 CSDC2Q9Y534 153 aaKnown RBP9.78□□□□□ -0.84
SF3B1-204ENST00000414963 TRAV8-6A0A0B4J262 113 aa9.77□□□□□ -0.85
SF3B1-204ENST00000414963 IGIPA6NJ69 53 aa9.77□□□□□ -0.85
SF3B1-204ENST00000414963 PKIAP61925 76 aa9.77□□□□□ -0.85
SF3B1-204ENST00000414963 RPL39P62891 51 aaKnown RBP9.77□□□□□ -0.85
SF3B1-204ENST00000414963 SMAGPQ0VAQ4 97 aa9.77□□□□□ -0.85
SF3B1-204ENST00000414963 CHCHD5Q9BSY4 110 aa9.77□□□□□ -0.85
SF3B1-204ENST00000414963 MRPS16Q9Y3D3 137 aaKnown RBP9.77□□□□□ -0.85
SF3B1-204ENST00000414963 LINC00588Q9Y4M8 146 aa9.77□□□□□ -0.85
SF3B1-204ENST00000414963 CSMD3Q7Z407 3707 aa9.76□□□□□ -0.85
SF3B1-204ENST00000414963 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.76□□□□□ -0.85
SF3B1-204ENST00000414963 IGKV2-29A2NJV5 120 aaPredicted RBP9.76□□□□□ -0.85
SF3B1-204ENST00000414963 NPSP0C0P6 89 aa9.76□□□□□ -0.85
SF3B1-204ENST00000414963 ERASQ7Z444 233 aa9.76□□□□□ -0.85
SF3B1-204ENST00000414963 UPK3BQ9BT76 320 aa9.76□□□□□ -0.85
SF3B1-204ENST00000414963 SPANXA1Q9NS26 97 aa9.76□□□□□ -0.85
SF3B1-204ENST00000414963 UBE2D4Q9Y2X8 147 aa9.76□□□□□ -0.85
SF3B1-204ENST00000414963 A0A1B0GUV1 79 aa9.75□□□□□ -0.85
SF3B1-204ENST00000414963 UBE2L6O14933 153 aa9.75□□□□□ -0.85
SF3B1-204ENST00000414963 FGF6P10767 208 aa9.75□□□□□ -0.85
SF3B1-204ENST00000414963 ZNF25P17030 456 aaPredicted RBP9.75□□□□□ -0.85
SF3B1-204ENST00000414963 TMEM141Q96I45 108 aa9.75□□□□□ -0.85
SF3B1-204ENST00000414963 SCGB3A1Q96QR1 104 aa9.75□□□□□ -0.85
SF3B1-204ENST00000414963 TIMM17AQ99595 171 aa9.75□□□□□ -0.85
SF3B1-204ENST00000414963 IFITM10A6NMD0 228 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 ATP5LO75964 103 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 LEPROTL1O95214 131 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 S100A2P29034 98 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 GAGE6Q13070 117 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 CASC10Q5T4H9 136 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 HIST1H2BLQ99880 126 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 HSPB8Q9UJY1 196 aa9.74□□□□□ -0.85
SF3B1-204ENST00000414963 MRPS36P82909 103 aaKnown RBP9.73□□□□□ -0.85
SF3B1-204ENST00000414963 FAM104AQ969W3 186 aa9.73□□□□□ -0.85
SF3B1-204ENST00000414963 TENM2Q9NT68 2774 aa9.73□□□□□ -0.85
SF3B1-204ENST00000414963 TMEM262E9PQX1 116 aa9.72□□□□□ -0.85
SF3B1-204ENST00000414963 RBX1P62877 108 aa9.72□□□□□ -0.85
SF3B1-204ENST00000414963 AMMECR1LQ6DCA0 310 aa9.72□□□□□ -0.85
SF3B1-204ENST00000414963 WFDC10BQ8IUB3 73 aa9.72□□□□□ -0.85
SF3B1-204ENST00000414963 IGLV4-3A0A075B6K6 122 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.71□□□□□ -0.86
SF3B1-204ENST00000414963 DNAH10OSP0CZ25 163 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 FABP4P15090 132 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 LINC01556Q5JQF7 62 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 DGAT2L7PQ6IED9 249 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 LINC00173Q6ZV60 143 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 OR5A1Q8NGJ0 315 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 IFI27L1Q96BM0 104 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 TMEM101Q96IK0 257 aa9.71□□□□□ -0.86
SF3B1-204ENST00000414963 CDC42SE2Q9NRR3 84 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 173.5 ms