RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 ODF3Q96PU9 254 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 ASCC3Q8N3C0 2202 aaKnown RBP3.43□□□□□ -1.86
PTPN13-202ENST00000411767 ZNF318Q5VUA4 2279 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.43□□□□□ -1.86
PTPN13-202ENST00000411767 ABCA7Q8IZY2 2146 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 BTAF1O14981 1849 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 WISP3O95389 354 aaPredicted RBP3.43□□□□□ -1.86
PTPN13-202ENST00000411767 DEFB135Q30KP9 77 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 C9orf116Q5BN46 136 aaPredicted RBP3.43□□□□□ -1.86
PTPN13-202ENST00000411767 PRO3102Q9H379 93 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 MAST2Q6P0Q8 1798 aa3.43□□□□□ -1.86
PTPN13-202ENST00000411767 RUSC1-AS1Q66K80 236 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 THSD7AQ9UPZ6 1657 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 LOC101927531A0A1B0GV80 90 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 LYNX1G3V0Z9 82 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 LY6G6DO95868 133 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 LYNX1P0DP58 116 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 TDRD15B5MCY1 1934 aaKnown RBP3.42□□□□□ -1.86
PTPN13-202ENST00000411767 WDR81Q562E7 1941 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 CACNA1SQ13698 1873 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 POM121L12Q8N7R1 296 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 PCNX2A6NKB5 2137 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 EPOPA6NHQ4 379 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 MCM3APO60318 1980 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 LAMB1P07942 1786 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 IGLV5-52A0A0A0MRZ9 124 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 RPL39P62891 51 aaKnown RBP3.42□□□□□ -1.86
PTPN13-202ENST00000411767 MLANAQ16655 118 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 LINC00173Q6ZV60 143 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 Q8NBF4 154 aa3.42□□□□□ -1.86
PTPN13-202ENST00000411767 MYO7BQ6PIF6 2116 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 J3QKU1 62 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 PRR15Q8IV56 129 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 Q8TCH9 128 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 BAZ2AQ9UIF9 1905 aaKnown RBP3.41□□□□□ -1.86
PTPN13-202ENST00000411767 WNK2Q9Y3S1 2297 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 C11orf1Q9H5F2 150 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 TDRD6O60522 2096 aaKnown RBP3.41□□□□□ -1.86
PTPN13-202ENST00000411767 ARTNQ5T4W7 220 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 MBD6Q96DN6 1003 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 A0A0J9YX75 114 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 Q8N2B8 174 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 CYYR1Q96J86 154 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 SEC16AO15027 2179 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 IGLV3-21P80748 117 aaPredicted RBP3.41□□□□□ -1.86
PTPN13-202ENST00000411767 LY6DQ14210 128 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 RITA1Q96K30 269 aa3.41□□□□□ -1.86
PTPN13-202ENST00000411767 FOCADQ5VW36 1801 aa3.4□□□□□ -1.86
PTPN13-202ENST00000411767 MPDZO75970 2070 aa3.4□□□□□ -1.86
PTPN13-202ENST00000411767 DMAC1Q96GE9 116 aa3.4□□□□□ -1.86
PTPN13-202ENST00000411767 IGLV4-60A0A075B6I1 120 aa3.4□□□□□ -1.86
PTPN13-202ENST00000411767 FAM19A4Q96LR4 140 aa3.4□□□□□ -1.86
PTPN13-202ENST00000411767 UBR3Q6ZT12 1888 aa3.4□□□□□ -1.86
PTPN13-202ENST00000411767 IGLV11-55A0A075B6I3 123 aa3.4□□□□□ -1.87
PTPN13-202ENST00000411767 IGLV3-12A0A075B6K2 115 aa3.4□□□□□ -1.87
PTPN13-202ENST00000411767 G3V318 75 aa3.4□□□□□ -1.87
PTPN13-202ENST00000411767 YLPM1P49750 1951 aaKnown RBP3.4□□□□□ -1.87
PTPN13-202ENST00000411767 UNQ9165/PRO28630Q6UXU0 137 aa3.4□□□□□ -1.87
PTPN13-202ENST00000411767 LINC00588Q9Y4M8 146 aa3.4□□□□□ -1.87
PTPN13-202ENST00000411767 DOCK1Q14185 1865 aa3.4□□□□□ -1.87
PTPN13-202ENST00000411767 TP53BP1Q12888 1972 aaPredicted RBP3.39□□□□□ -1.87
PTPN13-202ENST00000411767 Q1T7F1 81 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 POLR2AP24928 1970 aaKnown RBP3.39□□□□□ -1.87
PTPN13-202ENST00000411767 LY6G6CO95867 125 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 DEFB136Q30KP8 78 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 SMIM11BQ8TCY0 68 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 TPRP12270 2363 aaKnown RBP3.39□□□□□ -1.87
PTPN13-202ENST00000411767 IGLV8-61A0A075B6I0 122 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 ZNF22P17026 224 aaPredicted RBP3.39□□□□□ -1.87
PTPN13-202ENST00000411767 ANKRD36A6QL64 1941 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 LRRK1Q38SD2 2015 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 TRIP12Q14669 1992 aaPredicted RBP3.39□□□□□ -1.87
PTPN13-202ENST00000411767 TRBV6-4A0A1B0GX49 114 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 LELP1Q5T871 98 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 LINC00482Q8N8I6 264 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 RTTNQ86VV8 2226 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 CHTF8P0CG12 524 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 Q8IZM0 81 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 PI4KAP42356 2102 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 LINC00313P59037 77 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 EGFEM1PQ0D2K5 195 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 SMCHD1A6NHR9 2005 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 LRRC37AA6NMS7 1700 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 NUP214P35658 2090 aaPredicted RBP3.39□□□□□ -1.87
PTPN13-202ENST00000411767 COL4A1P02462 1669 aa3.39□□□□□ -1.87
PTPN13-202ENST00000411767 C1orf229Q6ZS94 237 aaPredicted RBP3.38□□□□□ -1.87
PTPN13-202ENST00000411767 TTTY13Q9BZ97 58 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 ZNRD1Q9P1U0 126 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 LTBP1Q14766 1721 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 DDX60LQ5H9U9 1706 aaKnown RBP3.38□□□□□ -1.87
PTPN13-202ENST00000411767 C10orf91Q5T1B1 145 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 MAP6D1Q9H9H5 199 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 IGLV6-57P01721 117 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 DEFB116Q30KQ4 102 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 CHCHD7Q9BUK0 85 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 IGLV2-14P01704 120 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 CLUHP3Q96NS8 147 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 CDKN2A-AS1Q9UH64 79 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 GTF3C1Q12789 2109 aa3.38□□□□□ -1.87
PTPN13-202ENST00000411767 COL11A1P12107 1806 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms