RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 COTL1Q14019 142 aa10.85□□□□□ -0.67
HMGA1-204ENST00000401473 LOC389332A0A1B0GUA5 103 aa10.85□□□□□ -0.67
HMGA1-204ENST00000401473 PRSS47A8MTI9 375 aa10.85□□□□□ -0.67
HMGA1-204ENST00000401473 TSHBP01222 138 aa10.85□□□□□ -0.67
HMGA1-204ENST00000401473 IQCJQ1A5X6 159 aa10.85□□□□□ -0.67
HMGA1-204ENST00000401473 LAMTOR2Q9Y2Q5 125 aa10.85□□□□□ -0.67
HMGA1-204ENST00000401473 TRAV8-6A0A0B4J262 113 aa10.84□□□□□ -0.67
HMGA1-204ENST00000401473 RPL32P62910 135 aaKnown RBP10.84□□□□□ -0.67
HMGA1-204ENST00000401473 SMIM2Q9BVW6 85 aa10.84□□□□□ -0.67
HMGA1-204ENST00000401473 TRBV25-1A0A075B6N4 114 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 TMEM97Q5BJF2 176 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 NIT1Q86X76 327 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 IGHV1-24A0A0C4DH33 117 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 DNAH10OSP0CZ25 163 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 CHCHD7Q9BUK0 85 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 KRTAP1-5Q9BYS1 174 aa10.83□□□□□ -0.68
HMGA1-204ENST00000401473 M0R2N4 97 aa10.82□□□□□ -0.68
HMGA1-204ENST00000401473 TRGC2P03986 189 aa10.82□□□□□ -0.68
HMGA1-204ENST00000401473 RAB5AP20339 215 aa10.82□□□□□ -0.68
HMGA1-204ENST00000401473 FRAS1Q86XX4 4008 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 TCAPO15273 167 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 AMTP48728 403 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 KIR2DL4Q99706 377 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 CHCHD5Q9BSY4 110 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 MAP1LC3AQ9H492 121 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 ESDP10768 282 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 IFI27P40305 119 aaPredicted RBP10.81□□□□□ -0.68
HMGA1-204ENST00000401473 LINC01556Q5JQF7 62 aa10.81□□□□□ -0.68
HMGA1-204ENST00000401473 NBDYA0A0U1RRE5 68 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 TMEM262E9PQX1 116 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 IGHV3-30P01768 117 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 IGHV3-33P01772 117 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 IGHV3-30-3P0DP02 117 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 IGHV3-30-5P0DP03 117 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 TMEM243Q9BU79 118 aa10.8□□□□□ -0.68
HMGA1-204ENST00000401473 GAGE6Q13070 117 aa10.79□□□□□ -0.68
HMGA1-204ENST00000401473 MPV17L2Q567V2 206 aa10.79□□□□□ -0.68
HMGA1-204ENST00000401473 Q6ZR54 194 aa10.79□□□□□ -0.68
HMGA1-204ENST00000401473 Q8N976 141 aa10.79□□□□□ -0.68
HMGA1-204ENST00000401473 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.78□□□□□ -0.68
HMGA1-204ENST00000401473 IGKV2-29A2NJV5 120 aaPredicted RBP10.78□□□□□ -0.68
HMGA1-204ENST00000401473 FCER1GP30273 86 aa10.78□□□□□ -0.68
HMGA1-204ENST00000401473 Q8N8P6 123 aa10.78□□□□□ -0.68
HMGA1-204ENST00000401473 C18orf32Q8TCD1 76 aa10.78□□□□□ -0.68
HMGA1-204ENST00000401473 A0A087WX48 190 aa10.76□□□□□ -0.69
HMGA1-204ENST00000401473 NXT2Q9NPJ8 142 aaKnown RBP10.76□□□□□ -0.69
HMGA1-204ENST00000401473 IGLV4-60A0A075B6I1 120 aa10.76□□□□□ -0.69
HMGA1-204ENST00000401473 RBX1P62877 108 aa10.76□□□□□ -0.69
HMGA1-204ENST00000401473 PRSS3P2Q8NHM4 247 aa10.76□□□□□ -0.69
HMGA1-204ENST00000401473 URB1-AS1Q96HZ7 61 aa10.76□□□□□ -0.69
HMGA1-204ENST00000401473 C20orf203Q8NBC4 194 aa10.75□□□□□ -0.69
HMGA1-204ENST00000401473 A0A1B0GUV1 79 aa10.74□□□□□ -0.69
HMGA1-204ENST00000401473 UBE2L6O14933 153 aa10.74□□□□□ -0.69
HMGA1-204ENST00000401473 RPL39P62891 51 aaKnown RBP10.74□□□□□ -0.69
HMGA1-204ENST00000401473 KLK12Q9UKR0 248 aa10.74□□□□□ -0.69
HMGA1-204ENST00000401473 TRAV9-2A0A087WT02 112 aa10.74□□□□□ -0.69
HMGA1-204ENST00000401473 FGF6P10767 208 aa10.74□□□□□ -0.69
HMGA1-204ENST00000401473 LINC01546A6NGU7 62 aa10.73□□□□□ -0.69
HMGA1-204ENST00000401473 IBA57-AS1B1ANH7 110 aa10.73□□□□□ -0.69
HMGA1-204ENST00000401473 H7C423 109 aa10.73□□□□□ -0.69
HMGA1-204ENST00000401473 K7EP13 123 aa10.73□□□□□ -0.69
HMGA1-204ENST00000401473 LAGE3Q14657 143 aa10.73□□□□□ -0.69
HMGA1-204ENST00000401473 TTC32Q5I0X7 151 aa10.72□□□□□ -0.69
HMGA1-204ENST00000401473 FAT2Q9NYQ8 4349 aa10.72□□□□□ -0.69
HMGA1-204ENST00000401473 DNAH17Q9UFH2 4485 aa10.72□□□□□ -0.69
HMGA1-204ENST00000401473 LOC105371267A0A1B0GV96 52 aa10.72□□□□□ -0.69
HMGA1-204ENST00000401473 K7EMI3 77 aa10.72□□□□□ -0.69
HMGA1-204ENST00000401473 ANGP03950 147 aaKnown RBP10.72□□□□□ -0.69
HMGA1-204ENST00000401473 UBE2D4Q9Y2X8 147 aa10.72□□□□□ -0.69
HMGA1-204ENST00000401473 LINC00614P0C842 121 aa10.71□□□□□ -0.69
HMGA1-204ENST00000401473 RNASEKQ6P5S7 137 aaKnown RBP10.71□□□□□ -0.69
HMGA1-204ENST00000401473 ENHOQ6UWT2 76 aa10.71□□□□□ -0.69
HMGA1-204ENST00000401473 MRPL52Q86TS9 123 aaKnown RBP10.71□□□□□ -0.69
HMGA1-204ENST00000401473 C10orf126Q8N4M7 172 aa10.71□□□□□ -0.69
HMGA1-204ENST00000401473 FAM104AQ969W3 186 aa10.71□□□□□ -0.69
HMGA1-204ENST00000401473 PKIAP61925 76 aa10.7□□□□□ -0.7
HMGA1-204ENST00000401473 ORMDL2Q53FV1 153 aa10.7□□□□□ -0.7
HMGA1-204ENST00000401473 AMMECR1LQ6DCA0 310 aa10.7□□□□□ -0.7
HMGA1-204ENST00000401473 LINC00269Q8N2A0 174 aa10.7□□□□□ -0.7
HMGA1-204ENST00000401473 C2orf66Q6UXQ4 117 aa10.69□□□□□ -0.7
HMGA1-204ENST00000401473 FA2HQ7L5A8 372 aa10.69□□□□□ -0.7
HMGA1-204ENST00000401473 CDC42SE2Q9NRR3 84 aa10.69□□□□□ -0.7
HMGA1-204ENST00000401473 AP5S1Q9NUS5 200 aa10.69□□□□□ -0.7
HMGA1-204ENST00000401473 PRR34Q9NV39 138 aa10.69□□□□□ -0.7
HMGA1-204ENST00000401473 ZNF25P17030 456 aaPredicted RBP10.68□□□□□ -0.7
HMGA1-204ENST00000401473 BTF3P20290 206 aaKnown RBP10.68□□□□□ -0.7
HMGA1-204ENST00000401473 Q0VG73 95 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 CLPSL2Q6UWE3 100 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 UBE2WQ96B02 151 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 OPRPNQ99935 248 aaPredicted RBP10.68□□□□□ -0.7
HMGA1-204ENST00000401473 Q9HAA7 133 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 CSDC2Q9Y534 153 aaKnown RBP10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BKO60814 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BJP06899 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BOP23527 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BBP33778 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BDP58876 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BCP62807 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST2H2BEQ16778 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms