RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 POM121L12Q8N7R1 296 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 TMEM141Q96I45 108 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 U3KQE9 123 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 TRBV30A0A0K0K1B3 111 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 J3KT08 172 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 C15orf32Q32M92 178 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 Q6YL49 198 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 C14orf178Q8N769 122 aaPredicted RBP8.31□□□□□ -1.08
CUX1-204ENST00000393824 ESM1Q9NQ30 184 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 IGHV3OR16-8A0A075B7F1 116 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.3□□□□□ -1.08
CUX1-204ENST00000393824 G3V318 75 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 ZNF876PQ49A33 203 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 METTL26Q96S19 204 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 TIMM17AQ99595 171 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 TRBV7-1A0A0A6YYK4 115 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 TRAV2A0A0B4J234 112 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 FAM240AA0A1B0GVK7 77 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 A0A1B0GX51 115 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 H3BMM0 161 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 ATP6V0E1O15342 81 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 EMP1P54849 157 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 TMEM170BQ5T4T1 132 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 OR13C6PQ8NH95 151 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 ZNRF2Q8NHG8 242 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 UBE2WQ96B02 151 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 CHCHD5Q9BSY4 110 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 C2CD3Q4AC94 2353 aa8.3□□□□□ -1.08
CUX1-204ENST00000393824 IGHV4OR15-8A0A075B7B6 117 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 A0A087WW49 117 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 INAFM1C9JVW0 142 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 ELANEP08246 267 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 LGALS3P17931 250 aaKnown RBP8.29□□□□□ -1.08
CUX1-204ENST00000393824 EEF1AKMT3Q96AZ1 226 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 TMEM101Q96IK0 257 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 LINC00477Q96M19 166 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 TP53TG1Q9Y2A0 90 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 MOB4Q9Y3A3 225 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 IGHV3-35A0A0C4DH35 117 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 PRR9Q5T870 116 aa8.29□□□□□ -1.08
CUX1-204ENST00000393824 ATRQ13535 2644 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 TRBV7-7A0A0K0K1E9 115 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 POLR2KP53803 58 aaKnown RBP8.28□□□□□ -1.08
CUX1-204ENST00000393824 MUSTN1Q8IVN3 82 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 PHLDA3Q9Y5J5 127 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 TENM1Q9UKZ4 2725 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 LEPROTO15243 131 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 NDUFA7O95182 113 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 ECSCRQ19T08 205 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 DEFB121Q5J5C9 76 aa8.28□□□□□ -1.08
CUX1-204ENST00000393824 TRAV21A0A0B4J279 112 aa8.27□□□□□ -1.09
CUX1-204ENST00000393824 A0A0J9YX75 114 aa8.27□□□□□ -1.09
CUX1-204ENST00000393824 H3BT86 120 aa8.27□□□□□ -1.09
CUX1-204ENST00000393824 MGPP08493 103 aa8.27□□□□□ -1.09
CUX1-204ENST00000393824 S100A4P26447 101 aaKnown RBP8.27□□□□□ -1.09
CUX1-204ENST00000393824 C10orf99Q6UWK7 81 aa8.27□□□□□ -1.09
CUX1-204ENST00000393824 CCDC140Q96MF4 163 aa8.27□□□□□ -1.09
CUX1-204ENST00000393824 H7C2G1 150 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 M0R2P5 195 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 OVOL1O14753 267 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 RPS28P62857 69 aaKnown RBP8.26□□□□□ -1.09
CUX1-204ENST00000393824 HIST2H2BDQ6DRA6 164 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 IGHV3-66A0A0C4DH42 116 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 TMEM223A0PJW6 202 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 DNAJC9-AS1A6NH13 148 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 LINC00315P59091 139 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 C2orf82Q6UX34 121 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 CLEC19AQ6UXS0 136 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 ZFAND2AQ8N6M9 145 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 C16orf92Q96LL3 132 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 KIF25-AS1Q9Y6Z4 181 aa8.26□□□□□ -1.09
CUX1-204ENST00000393824 SDHAF1A6NFY7 115 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 F5H768 121 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 H7C423 109 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 VCYO14598 125 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 SPRY2O43597 315 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 TRIAP1O43715 76 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 Q1RN00 199 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 C9orf153Q5TBE3 101 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 SPANXCQ9NY87 97 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 NXPH4O95158 308 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 IGF1P05019 195 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 RPL39P62891 51 aaKnown RBP8.25□□□□□ -1.09
CUX1-204ENST00000393824 HERVK_113P63121 156 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 SPANXDQ9BXN6 97 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 IMUPQ9GZP8 106 aa8.25□□□□□ -1.09
CUX1-204ENST00000393824 IGHG2P01859 326 aa8.24□□□□□ -1.09
CUX1-204ENST00000393824 C19orf54Q5BKX5 351 aa8.24□□□□□ -1.09
CUX1-204ENST00000393824 APRG1Q8IVJ8 170 aa8.24□□□□□ -1.09
CUX1-204ENST00000393824 C3orf22Q8N5N4 141 aa8.24□□□□□ -1.09
CUX1-204ENST00000393824 RNASE3P12724 160 aaKnown RBP8.24□□□□□ -1.09
CUX1-204ENST00000393824 ZNF56Q15929 161 aa8.24□□□□□ -1.09
CUX1-204ENST00000393824 FBN1P35555 2871 aaKnown RBP8.23□□□□□ -1.09
CUX1-204ENST00000393824 IGHV3OR16-13A0A075B7E8 117 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 IGHV3-74A0A0B4J1X5 117 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 TRBV27A0A0K0K1C4 114 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 FAM19A4Q96LR4 140 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 ZNF702PQ9H963 129 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 FAM223BA6NKX1 122 aa8.23□□□□□ -1.09
CUX1-204ENST00000393824 FAM223AQ8IWN6 122 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms