RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 C1QTNF4Q9BXJ3 329 aa8.64□□□□□ -1.03
USP3-202ENST00000380324 TRBV25-1A0A075B6N4 114 aa8.63□□□□□ -1.03
USP3-202ENST00000380324 MAPKAPK5-AS1Q8N8E1 139 aa8.63□□□□□ -1.03
USP3-202ENST00000380324 CSNK1G2-AS1Q8NCQ2 148 aa8.63□□□□□ -1.03
USP3-202ENST00000380324 OR11H2Q8NH07 326 aa8.63□□□□□ -1.03
USP3-202ENST00000380324 C16orf74Q96GX8 76 aa8.63□□□□□ -1.03
USP3-202ENST00000380324 NBEAL2Q6ZNJ1 2754 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 HSD52Q0P140 79 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 CEMP1Q6PRD7 247 aaPredicted RBP8.62□□□□□ -1.03
USP3-202ENST00000380324 CHAC1Q9BUX1 264 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 PLAC8L1A1L4L8 177 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 SIVA1O15304 175 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 RRN3P1Q2M238 152 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 PRADC1Q9BSG0 188 aa8.62□□□□□ -1.03
USP3-202ENST00000380324 IGLV4-3A0A075B6K6 122 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 GAGE12BA1L429 117 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 GAGE7O76087 117 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 GAGE12FP0CL80 117 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 GAGE12GP0CL81 117 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 GAGE12IP0CL82 117 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 RNASE13Q5GAN3 156 aaKnown RBP8.61□□□□□ -1.03
USP3-202ENST00000380324 TMEM170BQ5T4T1 132 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 COX11Q9Y6N1 276 aa8.61□□□□□ -1.03
USP3-202ENST00000380324 TRGV2A0A075B6R0 118 aa8.6□□□□□ -1.03
USP3-202ENST00000380324 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.6□□□□□ -1.03
USP3-202ENST00000380324 IGKV2-29A2NJV5 120 aaPredicted RBP8.6□□□□□ -1.03
USP3-202ENST00000380324 ZNRF2Q8NHG8 242 aa8.6□□□□□ -1.03
USP3-202ENST00000380324 TRAV4A0A0B4J268 109 aa8.6□□□□□ -1.03
USP3-202ENST00000380324 C9orf66Q5T8R8 295 aa8.6□□□□□ -1.03
USP3-202ENST00000380324 CITED1Q99966 193 aa8.6□□□□□ -1.03
USP3-202ENST00000380324 E9PLD3 99 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 K7EQD1 137 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 TAX1BP3O14907 124 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 GCSHP23434 173 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 DAZ2Q13117 558 aaKnown RBP8.59□□□□□ -1.03
USP3-202ENST00000380324 COTL1Q14019 142 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 ORAOV1Q8WV07 137 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 DNAJC30Q96LL9 226 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 CHCHD7Q9BUK0 85 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 NPSP0C0P6 89 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 INSL3P51460 131 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 SEC11AP67812 179 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 PAPPA-AS1Q5QFB9 102 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 VCX2Q9H322 139 aa8.59□□□□□ -1.03
USP3-202ENST00000380324 K7EP13 123 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 CFAP161Q6P656 301 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 SLC25A29Q8N8R3 303 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 HIGD1BQ9P298 99 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 TRBV7-3A0A075B6L6 115 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 MYMXA0A1B0GTQ4 84 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 HERVK_113P61574 105 aa8.58□□□□□ -1.04
USP3-202ENST00000380324 ZNF815PA8K554 130 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 IGHV3-64A0A075B6Q5 118 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 A0A0J9YXV3 536 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 A6NDN8 102 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 GAGE12JA6NER3 117 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 FXYD2P54710 66 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 RPL36AP83881 106 aaKnown RBP8.57□□□□□ -1.04
USP3-202ENST00000380324 GAGE1Q13065 139 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 GAGE4Q13068 117 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 GAGE5Q13069 117 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 GAGE13Q4V321 117 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 RPL36ALQ969Q0 106 aaKnown RBP8.57□□□□□ -1.04
USP3-202ENST00000380324 FAM104AQ969W3 186 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 UBE2D4Q9Y2X8 147 aa8.57□□□□□ -1.04
USP3-202ENST00000380324 Q6ZUT4 128 aa8.56□□□□□ -1.04
USP3-202ENST00000380324 PYGO1Q9Y3Y4 419 aa8.56□□□□□ -1.04
USP3-202ENST00000380324 TSPEAR-AS2P59090 65 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 SCGB1D4Q6XE38 83 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 NFE4Q86UQ8 179 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 TRBV10-1A0A0K0K1A3 114 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 LOC100131303A0A0U1RQF7 123 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 RAB37Q96AX2 223 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 SPANXA1Q9NS26 97 aa8.55□□□□□ -1.04
USP3-202ENST00000380324 TRGV4A0A0C4DH28 118 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 DEFB130BP0DP73 79 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 DEFB130AP0DP74 79 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 PTTG1IPP53801 180 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 VAMP3Q15836 100 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 PLEKHB2Q96CS7 222 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 HIST1H4GQ99525 98 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 NAA38Q9BRA0 125 aaKnown RBP8.54□□□□□ -1.04
USP3-202ENST00000380324 OVOL2Q9BRP0 275 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 K7ERJ3 54 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 ZNF22P17026 224 aaPredicted RBP8.54□□□□□ -1.04
USP3-202ENST00000380324 CEND1Q8N111 149 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 AMELXQ99217 191 aa8.54□□□□□ -1.04
USP3-202ENST00000380324 DEFB135Q30KP9 77 aa8.53□□□□□ -1.04
USP3-202ENST00000380324 LINC00694P0DN24 101 aa8.53□□□□□ -1.04
USP3-202ENST00000380324 UBE2D3P61077 147 aa8.53□□□□□ -1.04
USP3-202ENST00000380324 UBE2D2P62837 147 aa8.53□□□□□ -1.04
USP3-202ENST00000380324 NHP2Q9NX24 153 aaKnown RBP8.53□□□□□ -1.04
USP3-202ENST00000380324 DGAT2L7PQ6IED9 249 aa8.52□□□□□ -1.05
USP3-202ENST00000380324 NTM-AS1Q6ZSK4 140 aa8.52□□□□□ -1.05
USP3-202ENST00000380324 DAZ4Q86SG3 579 aaKnown RBP8.52□□□□□ -1.05
USP3-202ENST00000380324 DAZ3Q9NR90 486 aaKnown RBP8.52□□□□□ -1.05
USP3-202ENST00000380324 X6R8D5 127 aa8.52□□□□□ -1.05
USP3-202ENST00000380324 STAB1Q9NY15 2570 aa8.52□□□□□ -1.05
USP3-202ENST00000380324 TMEM223A0PJW6 202 aa8.52□□□□□ -1.05
USP3-202ENST00000380324 J3QQQ9 107 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms