RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 STAB2Q8WWQ8 2551 aa13.04□□□□□ -0.32
CLN3-206ENST00000360019 F5H768 121 aa13.04□□□□□ -0.32
CLN3-206ENST00000360019 Q6ZTC4 211 aa13.04□□□□□ -0.32
CLN3-206ENST00000360019 C3orf79P0CE67 100 aa13.03□□□□□ -0.32
CLN3-206ENST00000360019 DAZ4Q86SG3 579 aaKnown RBP13.03□□□□□ -0.32
CLN3-206ENST00000360019 DAZ3Q9NR90 486 aaKnown RBP13.03□□□□□ -0.32
CLN3-206ENST00000360019 HSPB8Q9UJY1 196 aa13.03□□□□□ -0.32
CLN3-206ENST00000360019 A0A0J9YY99 117 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 PAX4O43316 350 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 GYPEP15421 78 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 NANOS2P60321 138 aaKnown RBP13.02□□□□□ -0.32
CLN3-206ENST00000360019 KRTDAPP60985 99 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 DEFA6Q01524 100 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 PYY3Q5JQD4 70 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 C2orf66Q6UXQ4 117 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 C11orf45Q8TAV5 145 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 TOMM6Q96B49 74 aa13.02□□□□□ -0.32
CLN3-206ENST00000360019 TRAV26-1A0A087WT03 109 aa13.02□□□□□ -0.33
CLN3-206ENST00000360019 COTL1Q14019 142 aa13.01□□□□□ -0.33
CLN3-206ENST00000360019 RPL39P62891 51 aaKnown RBP13□□□□□ -0.33
CLN3-206ENST00000360019 DYNC2H1Q8NCM8 4307 aaKnown RBP13□□□□□ -0.33
CLN3-206ENST00000360019 JOSD1Q15040 202 aaPredicted RBP12.99□□□□□ -0.33
CLN3-206ENST00000360019 NTM-AS1Q6ZSK4 140 aa12.99□□□□□ -0.33
CLN3-206ENST00000360019 C20orf203Q8NBC4 194 aa12.99□□□□□ -0.33
CLN3-206ENST00000360019 CHCHD7Q9BUK0 85 aa12.99□□□□□ -0.33
CLN3-206ENST00000360019 CYSLTR1Q9Y271 337 aa12.99□□□□□ -0.33
CLN3-206ENST00000360019 SPATA12Q7Z6I5 190 aa12.98□□□□□ -0.33
CLN3-206ENST00000360019 Q8N976 141 aa12.98□□□□□ -0.33
CLN3-206ENST00000360019 IFI27L1Q96BM0 104 aa12.98□□□□□ -0.33
CLN3-206ENST00000360019 MAP1LC3CQ9BXW4 147 aa12.98□□□□□ -0.33
CLN3-206ENST00000360019 SYS1-DBNDD2H3BUS1 97 aa12.97□□□□□ -0.33
CLN3-206ENST00000360019 G0S2P27469 103 aa12.97□□□□□ -0.33
CLN3-206ENST00000360019 SCGB3A1Q96QR1 104 aa12.96□□□□□ -0.33
CLN3-206ENST00000360019 DNAH7Q8WXX0 4024 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 IGIPA6NJ69 53 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 H0Y8G0 127 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 ATP5LO75964 103 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 SMIM6P0DI80 62 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 CDPF1Q6NVV7 123 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 ERASQ7Z444 233 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 ATP6V0E2Q8NHE4 81 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 GTSF1LQ9H1H1 148 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.95□□□□□ -0.34
CLN3-206ENST00000360019 A0A096LPF7 62 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 IGKV2-29A2NJV5 120 aaPredicted RBP12.95□□□□□ -0.34
CLN3-206ENST00000360019 SCGB1D1O95968 90 aa12.95□□□□□ -0.34
CLN3-206ENST00000360019 LINC01549A6NIU2 74 aa12.94□□□□□ -0.34
CLN3-206ENST00000360019 DEFB131BA0A096LNP1 70 aa12.93□□□□□ -0.34
CLN3-206ENST00000360019 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.93□□□□□ -0.34
CLN3-206ENST00000360019 PET117Q6UWS5 81 aa12.93□□□□□ -0.34
CLN3-206ENST00000360019 NHLRC4P0CG21 123 aaPredicted RBP12.92□□□□□ -0.34
CLN3-206ENST00000360019 LINC00518Q8N0U6 118 aa12.92□□□□□ -0.34
CLN3-206ENST00000360019 TIMM17AQ99595 171 aa12.92□□□□□ -0.34
CLN3-206ENST00000360019 TRBV6-8A0A0A6YYG3 113 aa12.92□□□□□ -0.34
CLN3-206ENST00000360019 FBN3Q75N90 2809 aa12.92□□□□□ -0.34
CLN3-206ENST00000360019 H3BNG1 76 aa12.91□□□□□ -0.34
CLN3-206ENST00000360019 PLECQ15149 4684 aaKnown RBP12.91□□□□□ -0.34
CLN3-206ENST00000360019 MRPL23Q16540 153 aaKnown RBP12.91□□□□□ -0.34
CLN3-206ENST00000360019 UBE2D4Q9Y2X8 147 aa12.91□□□□□ -0.34
CLN3-206ENST00000360019 ICOSQ9Y6W8 199 aa12.91□□□□□ -0.34
CLN3-206ENST00000360019 TRBV25-1A0A075B6N4 114 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 PRSS1P07477 247 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 CEMP1Q6PRD7 247 aaPredicted RBP12.9□□□□□ -0.34
CLN3-206ENST00000360019 BAALCQ8WXS3 180 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 TMEM141Q96I45 108 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 C12orf57Q99622 126 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 OPRPNQ99935 248 aaPredicted RBP12.9□□□□□ -0.34
CLN3-206ENST00000360019 LINC01545Q5VT33 79 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 Q6ZN92 141 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 FAM104AQ969W3 186 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 PMCHL2Q9BQD1 86 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 TMEM243Q9BU79 118 aa12.9□□□□□ -0.34
CLN3-206ENST00000360019 TRAV10A0A0B4J240 114 aa12.89□□□□□ -0.35
CLN3-206ENST00000360019 TMEM97Q5BJF2 176 aa12.89□□□□□ -0.35
CLN3-206ENST00000360019 PYGO1Q9Y3Y4 419 aa12.89□□□□□ -0.35
CLN3-206ENST00000360019 IGLV4-3A0A075B6K6 122 aa12.88□□□□□ -0.35
CLN3-206ENST00000360019 ODF1Q14990 250 aa12.88□□□□□ -0.35
CLN3-206ENST00000360019 ZC2HC1BQ5TFG8 222 aa12.88□□□□□ -0.35
CLN3-206ENST00000360019 LGALS9CQ6DKI2 356 aa12.88□□□□□ -0.35
CLN3-206ENST00000360019 SPANXA1Q9NS26 97 aa12.88□□□□□ -0.35
CLN3-206ENST00000360019 C20orf202A1L168 122 aa12.87□□□□□ -0.35
CLN3-206ENST00000360019 FGF6P10767 208 aa12.86□□□□□ -0.35
CLN3-206ENST00000360019 SH2D6Q7Z4S9 175 aa12.86□□□□□ -0.35
CLN3-206ENST00000360019 ATOH7Q8N100 152 aa12.86□□□□□ -0.35
CLN3-206ENST00000360019 CSMD3Q7Z407 3707 aa12.86□□□□□ -0.35
CLN3-206ENST00000360019 A0A087WX48 190 aa12.85□□□□□ -0.35
CLN3-206ENST00000360019 TRAV12-1A0A0B4J245 112 aa12.85□□□□□ -0.35
CLN3-206ENST00000360019 UBE2L6O14933 153 aa12.85□□□□□ -0.35
CLN3-206ENST00000360019 TEX43Q6ZNM6 134 aa12.85□□□□□ -0.35
CLN3-206ENST00000360019 MRPL52Q86TS9 123 aaKnown RBP12.85□□□□□ -0.35
CLN3-206ENST00000360019 TIMM21Q9BVV7 248 aa12.85□□□□□ -0.35
CLN3-206ENST00000360019 STARD9Q9P2P6 4700 aa12.84□□□□□ -0.35
CLN3-206ENST00000360019 PRSS29PA6NIE9 313 aa12.84□□□□□ -0.35
CLN3-206ENST00000360019 GAGE6Q13070 117 aa12.84□□□□□ -0.35
CLN3-206ENST00000360019 Q6ZUT4 128 aa12.84□□□□□ -0.35
CLN3-206ENST00000360019 CHCHD5Q9BSY4 110 aa12.84□□□□□ -0.35
CLN3-206ENST00000360019 H7C423 109 aa12.83□□□□□ -0.35
CLN3-206ENST00000360019 NPSP0C0P6 89 aa12.83□□□□□ -0.35
CLN3-206ENST00000360019 MRPL35Q9NZE8 188 aaKnown RBP12.83□□□□□ -0.35
CLN3-206ENST00000360019 PMVKQ15126 192 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms