RNA–Protein interactions for RNA: ENST00000355155.5

VPS13B-201, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 1 (best) BASIC

Gene VPS13B, Length 2,822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-201ENST00000355155 FAM104AQ969W3 186 aa12.21□□□□□ -0.45
VPS13B-201ENST00000355155 CST9LQ9H4G1 147 aa12.21□□□□□ -0.45
VPS13B-201ENST00000355155 SPANXA1Q9NS26 97 aa12.21□□□□□ -0.45
VPS13B-201ENST00000355155 SIVA1O15304 175 aa12.21□□□□□ -0.46
VPS13B-201ENST00000355155 MIFP14174 115 aa12.21□□□□□ -0.46
VPS13B-201ENST00000355155 RPL39P62891 51 aaKnown RBP12.21□□□□□ -0.46
VPS13B-201ENST00000355155 SLC25A34Q6PIV7 304 aa12.21□□□□□ -0.46
VPS13B-201ENST00000355155 SLC25A29Q8N8R3 303 aa12.21□□□□□ -0.46
VPS13B-201ENST00000355155 AMELXQ99217 191 aa12.21□□□□□ -0.46
VPS13B-201ENST00000355155 IGHV4-30-4P0DP06 118 aa12.2□□□□□ -0.46
VPS13B-201ENST00000355155 RPL36AP83881 106 aaKnown RBP12.2□□□□□ -0.46
VPS13B-201ENST00000355155 RPL36ALQ969Q0 106 aaKnown RBP12.2□□□□□ -0.46
VPS13B-201ENST00000355155 C2orf88Q9BSF0 95 aa12.2□□□□□ -0.46
VPS13B-201ENST00000355155 KRTAP10-11P60412 298 aa12.2□□□□□ -0.46
VPS13B-201ENST00000355155 NFE4Q86UQ8 179 aa12.2□□□□□ -0.46
VPS13B-201ENST00000355155 TEP1Q99973 2627 aaKnown RBP12.2□□□□□ -0.46
VPS13B-201ENST00000355155 IGLV4-69A0A075B6H9 119 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 GAGE12BA1L429 117 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 GAGE7O76087 117 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 GAGE12FP0CL80 117 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 GAGE12GP0CL81 117 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 GAGE12IP0CL82 117 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 MRPS36P82909 103 aaKnown RBP12.19□□□□□ -0.46
VPS13B-201ENST00000355155 SBSPONQ8IVN8 264 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 COTL1Q14019 142 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 Q8NAQ8 132 aa12.19□□□□□ -0.46
VPS13B-201ENST00000355155 CSDC2Q9Y534 153 aaKnown RBP12.19□□□□□ -0.46
VPS13B-201ENST00000355155 TENM1Q9UKZ4 2725 aa12.18□□□□□ -0.46
VPS13B-201ENST00000355155 IGLV4-3A0A075B6K6 122 aa12.18□□□□□ -0.46
VPS13B-201ENST00000355155 M0R143 59 aa12.18□□□□□ -0.46
VPS13B-201ENST00000355155 HNRNPA3P51991 378 aaKnown RBP12.18□□□□□ -0.46
VPS13B-201ENST00000355155 SNHG12Q9BXW3 62 aa12.18□□□□□ -0.46
VPS13B-201ENST00000355155 UBE2D4Q9Y2X8 147 aa12.18□□□□□ -0.46
VPS13B-201ENST00000355155 TRGV2A0A075B6R0 118 aa12.17□□□□□ -0.46
VPS13B-201ENST00000355155 H7C423 109 aa12.17□□□□□ -0.46
VPS13B-201ENST00000355155 STPG4Q8N801 248 aa12.17□□□□□ -0.46
VPS13B-201ENST00000355155 ZNRF2Q8NHG8 242 aa12.16□□□□□ -0.46
VPS13B-201ENST00000355155 SAMD5Q5TGI4 173 aa12.16□□□□□ -0.46
VPS13B-201ENST00000355155 C2orf91Q6ZV80 131 aa12.16□□□□□ -0.46
VPS13B-201ENST00000355155 FAM19A3Q7Z5A8 133 aa12.16□□□□□ -0.46
VPS13B-201ENST00000355155 TMEM97Q5BJF2 176 aa12.15□□□□□ -0.46
VPS13B-201ENST00000355155 ZC2HC1BQ5TFG8 222 aa12.15□□□□□ -0.46
VPS13B-201ENST00000355155 C11orf86A6NJI1 115 aa12.15□□□□□ -0.47
VPS13B-201ENST00000355155 OR11H2Q8NH07 326 aa12.15□□□□□ -0.47
VPS13B-201ENST00000355155 NIPBLQ6KC79 2804 aaeCLIP12.14□□□□□ -0.472e-7■■■□□ 16.1
VPS13B-201ENST00000355155 OXLD1Q5BKU9 147 aa12.14□□□□□ -0.47
VPS13B-201ENST00000355155 PRADC1Q9BSG0 188 aa12.14□□□□□ -0.47
VPS13B-201ENST00000355155 HIGD1BQ9P298 99 aa12.14□□□□□ -0.47
VPS13B-201ENST00000355155 E9PLD3 99 aa12.14□□□□□ -0.47
VPS13B-201ENST00000355155 IGHV4-28A0A0C4DH34 117 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 TEX48A0A1B0GUV7 120 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 EREGO14944 169 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 SMAGPQ0VAQ4 97 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 DEFB135Q30KP9 77 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 NTM-AS1Q6ZSK4 140 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 VWFP04275 2813 aa12.13□□□□□ -0.47
VPS13B-201ENST00000355155 SETD2Q9BYW2 2564 aaPredicted RBP12.12□□□□□ -0.47
VPS13B-201ENST00000355155 TRGV4A0A0C4DH28 118 aa12.12□□□□□ -0.47
VPS13B-201ENST00000355155 IGKV2D-26A0A0A0MRZ7 120 aa12.12□□□□□ -0.47
VPS13B-201ENST00000355155 ANK2Q01484 3957 aa12.12□□□□□ -0.47
VPS13B-201ENST00000355155 FAM222AQ5U5X8 452 aa12.11□□□□□ -0.47
VPS13B-201ENST00000355155 PHLDA1Q8WV24 401 aaPredicted RBP12.1□□□□□ -0.47
VPS13B-201ENST00000355155 VCX2Q9H322 139 aa12.1□□□□□ -0.47
VPS13B-201ENST00000355155 FBN1P35555 2871 aaKnown RBP12.09□□□□□ -0.47
VPS13B-201ENST00000355155 KPRPQ5T749 579 aaPredicted RBP12.09□□□□□ -0.47
VPS13B-201ENST00000355155 PRO0255Q9UI72 69 aa12.09□□□□□ -0.47
VPS13B-201ENST00000355155 GAGE12JA6NER3 117 aa12.09□□□□□ -0.47
VPS13B-201ENST00000355155 GAGE1Q13065 139 aa12.09□□□□□ -0.47
VPS13B-201ENST00000355155 GAGE4Q13068 117 aa12.09□□□□□ -0.47
VPS13B-201ENST00000355155 GAGE5Q13069 117 aa12.09□□□□□ -0.47
VPS13B-201ENST00000355155 GAGE13Q4V321 117 aa12.09□□□□□ -0.47
VPS13B-201ENST00000355155 IGHV3-38A0A0C4DH36 116 aa12.08□□□□□ -0.48
VPS13B-201ENST00000355155 C11orf68Q9H3H3 251 aaKnown RBP12.08□□□□□ -0.48
VPS13B-201ENST00000355155 TINCRA0A1B0GVN0 87 aa12.08□□□□□ -0.48
VPS13B-201ENST00000355155 PCP2Q8IVA1 136 aa12.08□□□□□ -0.48
VPS13B-201ENST00000355155 TRAV26-1A0A087WT03 109 aa12.07□□□□□ -0.48
VPS13B-201ENST00000355155 OPRPNQ99935 248 aaPredicted RBP12.07□□□□□ -0.48
VPS13B-201ENST00000355155 IGLV5-45A0A087WSX0 123 aa12.07□□□□□ -0.48
VPS13B-201ENST00000355155 ZNF25P17030 456 aaPredicted RBP12.07□□□□□ -0.48
VPS13B-201ENST00000355155 DEFB104AQ8WTQ1 72 aa12.07□□□□□ -0.48
VPS13B-201ENST00000355155 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.06□□□□□ -0.48
VPS13B-201ENST00000355155 IGKV2-29A2NJV5 120 aaPredicted RBP12.06□□□□□ -0.48
VPS13B-201ENST00000355155 SPART-AS1P0CW21 52 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 TIRAPP58753 221 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 FLNBO75369 2602 aaKnown RBP12.06□□□□□ -0.48
VPS13B-201ENST00000355155 TRRAPQ9Y4A5 3859 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 TMEM223A0PJW6 202 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 HERVK_113P61574 105 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 LOC100131303A0A0U1RQF7 123 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 NMUP48645 174 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 UBE2D1P51668 147 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 EMP1P54849 157 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 TMEM243Q9BU79 118 aa12.06□□□□□ -0.48
VPS13B-201ENST00000355155 DEFB130BP0DP73 79 aa12.05□□□□□ -0.48
VPS13B-201ENST00000355155 DEFB130AP0DP74 79 aa12.05□□□□□ -0.48
VPS13B-201ENST00000355155 ZNF22P17026 224 aaPredicted RBP12.05□□□□□ -0.48
VPS13B-201ENST00000355155 TP73-AS1Q9UF72 201 aa12.05□□□□□ -0.48
VPS13B-201ENST00000355155 ATRQ13535 2644 aa12.05□□□□□ -0.48
VPS13B-201ENST00000355155 Q6ZUT4 128 aa12.05□□□□□ -0.48
VPS13B-201ENST00000355155 TRBV6-8A0A0A6YYG3 113 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms