RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 F5H697 171 aa12.23□□□□□ -0.45
CPSF4-201ENST00000292476 K7ERU9 68 aa12.23□□□□□ -0.45
CPSF4-201ENST00000292476 RBMY1DP0C7P1 496 aaKnown RBP12.23□□□□□ -0.45
CPSF4-201ENST00000292476 HERVK_113P61574 105 aa12.23□□□□□ -0.45
CPSF4-201ENST00000292476 MORN3Q6PF18 240 aaPredicted RBP12.23□□□□□ -0.45
CPSF4-201ENST00000292476 RAB37Q96AX2 223 aa12.23□□□□□ -0.45
CPSF4-201ENST00000292476 SPCS1Q9Y6A9 102 aa12.23□□□□□ -0.45
CPSF4-201ENST00000292476 A0A087WWL8 130 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 M0QY20 66 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 CRYGDP07320 174 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 JPT2Q9H910 190 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 C19orf73Q9NVV2 129 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 MDFICQ9P1T7 246 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 SORL1Q92673 2214 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 A0A1B0GWB2 263 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 PIK3CD-AS1Q5SR53 167 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 HIST1H4GQ99525 98 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 PRADC1Q9BSG0 188 aa12.22□□□□□ -0.45
CPSF4-201ENST00000292476 WIPF1O43516 503 aa12.21□□□□□ -0.45
CPSF4-201ENST00000292476 TSHBP01222 138 aa12.21□□□□□ -0.45
CPSF4-201ENST00000292476 LINC01587Q99440 93 aa12.21□□□□□ -0.45
CPSF4-201ENST00000292476 NHP2Q9NX24 153 aaKnown RBP12.21□□□□□ -0.45
CPSF4-201ENST00000292476 IGLV4-69A0A075B6H9 119 aa12.2□□□□□ -0.46
CPSF4-201ENST00000292476 PTH2Q96A98 100 aa12.2□□□□□ -0.46
CPSF4-201ENST00000292476 C11orf86A6NJI1 115 aa12.19□□□□□ -0.46
CPSF4-201ENST00000292476 ZNF56Q15929 161 aa12.19□□□□□ -0.46
CPSF4-201ENST00000292476 NEGR1Q7Z3B1 354 aa12.19□□□□□ -0.46
CPSF4-201ENST00000292476 AGRNO00468 2067 aa12.19□□□□□ -0.46
CPSF4-201ENST00000292476 C12orf74Q32Q52 190 aa12.19□□□□□ -0.46
CPSF4-201ENST00000292476 ZNF415Q09FC8 603 aa12.18□□□□□ -0.46
CPSF4-201ENST00000292476 ZNF876PQ49A33 203 aa12.18□□□□□ -0.46
CPSF4-201ENST00000292476 FAM74A4Q5TZK3 123 aa12.18□□□□□ -0.46
CPSF4-201ENST00000292476 XCL2Q9UBD3 114 aa12.18□□□□□ -0.46
CPSF4-201ENST00000292476 TMEM238LA0A1B0GVL6 79 aa12.17□□□□□ -0.46
CPSF4-201ENST00000292476 A6NJY4 79 aa12.17□□□□□ -0.46
CPSF4-201ENST00000292476 ZNF815PA8K554 130 aa12.17□□□□□ -0.46
CPSF4-201ENST00000292476 RBMY1A1P0DJD3 496 aaKnown RBP12.17□□□□□ -0.46
CPSF4-201ENST00000292476 RBMY1CP0DJD4 496 aa12.17□□□□□ -0.46
CPSF4-201ENST00000292476 RBMY1FQ15415 496 aaKnown RBP12.17□□□□□ -0.46
CPSF4-201ENST00000292476 NAA38Q9BRA0 125 aaKnown RBP12.17□□□□□ -0.46
CPSF4-201ENST00000292476 IGLL5B9A064 214 aa12.16□□□□□ -0.46
CPSF4-201ENST00000292476 I3L3M4 83 aa12.16□□□□□ -0.46
CPSF4-201ENST00000292476 K7ERJ3 54 aa12.16□□□□□ -0.46
CPSF4-201ENST00000292476 NFE4Q86UQ8 179 aa12.16□□□□□ -0.46
CPSF4-201ENST00000292476 SPXQ9BT56 116 aa12.16□□□□□ -0.46
CPSF4-201ENST00000292476 HTN1P15515 57 aa12.16□□□□□ -0.46
CPSF4-201ENST00000292476 RPL39P62891 51 aaKnown RBP12.16□□□□□ -0.46
CPSF4-201ENST00000292476 ZNF479Q96JC4 524 aa12.15□□□□□ -0.46
CPSF4-201ENST00000292476 RPL35AP18077 110 aaKnown RBP12.14□□□□□ -0.47
CPSF4-201ENST00000292476 C20orf203Q8NBC4 194 aa12.14□□□□□ -0.47
CPSF4-201ENST00000292476 SPANXB1Q9NS25 103 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-201ENST00000292476 A8MWV9 139 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 M0R2P5 195 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 CRYBA4P53673 196 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 RRN3P1Q2M238 152 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 WFDC10AQ9H1F0 79 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 RNF151Q2KHN1 245 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 SCGB1D4Q6XE38 83 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 C1orf158Q8N1D5 194 aa12.13□□□□□ -0.47
CPSF4-201ENST00000292476 G3V4G9 280 aa12.12□□□□□ -0.47
CPSF4-201ENST00000292476 PYGO1Q9Y3Y4 419 aa12.12□□□□□ -0.47
CPSF4-201ENST00000292476 NOTCH3Q9UM47 2321 aa12.12□□□□□ -0.47
CPSF4-201ENST00000292476 IGHV3OR16-12A0A075B7B8 117 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 F8W1H4 67 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 P0DMU3 169 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 FAM231AP0DMU4 169 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 FAM231CP0DMU5 169 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 UBE2D1P51668 147 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 OXLD1Q5BKU9 147 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 KIR2DL5BQ8NHK3 375 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 TMEM263Q8WUH6 116 aaKnown RBP12.1□□□□□ -0.47
CPSF4-201ENST00000292476 VPS25Q9BRG1 176 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 NOTCH1P46531 2555 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 A0A0J9YY99 117 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 RHODO00212 210 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 GIG44P09565 113 aaPredicted RBP12.1□□□□□ -0.47
CPSF4-201ENST00000292476 PCP4P48539 62 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 APOC4P55056 127 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 TMEM170BQ5T4T1 132 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 C11orf72Q8NBR9 251 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 ZNRF2Q8NHG8 242 aa12.1□□□□□ -0.47
CPSF4-201ENST00000292476 SRSF9Q13242 221 aaKnown RBP eCLIP12.09□□□□□ -0.47
CPSF4-201ENST00000292476 CSNK1G2-AS1Q8NCQ2 148 aa12.09□□□□□ -0.47
CPSF4-201ENST00000292476 PLEKHB2Q96CS7 222 aa12.09□□□□□ -0.47
CPSF4-201ENST00000292476 C16orf74Q96GX8 76 aa12.09□□□□□ -0.47
CPSF4-201ENST00000292476 LEPROTO15243 131 aa12.08□□□□□ -0.48
CPSF4-201ENST00000292476 IGLV4-3A0A075B6K6 122 aa12.07□□□□□ -0.48
CPSF4-201ENST00000292476 TMEM223A0PJW6 202 aa12.07□□□□□ -0.48
CPSF4-201ENST00000292476 J3QQQ9 107 aa12.07□□□□□ -0.48
CPSF4-201ENST00000292476 SLC25A29Q8N8R3 303 aa12.07□□□□□ -0.48
CPSF4-201ENST00000292476 MEGF8Q7Z7M0 2845 aa12.07□□□□□ -0.48
CPSF4-201ENST00000292476 DNAJC30Q96LL9 226 aa12.06□□□□□ -0.48
CPSF4-201ENST00000292476 AMELXQ99217 191 aa12.06□□□□□ -0.48
CPSF4-201ENST00000292476 SMIM9A6NGZ8 99 aa12.06□□□□□ -0.48
CPSF4-201ENST00000292476 LGALS3P17931 250 aaKnown RBP12.06□□□□□ -0.48
CPSF4-201ENST00000292476 LYRM7Q5U5X0 104 aa12.06□□□□□ -0.48
CPSF4-201ENST00000292476 VCX2Q9H322 139 aa12.06□□□□□ -0.48
CPSF4-201ENST00000292476 TNFRSF18Q9Y5U5 241 aa12.06□□□□□ -0.48
CPSF4-201ENST00000292476 EMP1P54849 157 aa12.05□□□□□ -0.48
CPSF4-201ENST00000292476 TSPEAR-AS2P59090 65 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms