RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 IGHV4-30-4P0DP06 118 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 C1orf158Q8N1D5 194 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 CRYGDP07320 174 aa8.46□□□□□ -1.05
VPS4A-201ENST00000254950 RPL39P62891 51 aaKnown RBP8.46□□□□□ -1.05
VPS4A-201ENST00000254950 SNCGO76070 127 aa8.46□□□□□ -1.06
VPS4A-201ENST00000254950 RBMY1BA6NDE4 496 aaKnown RBP8.46□□□□□ -1.06
VPS4A-201ENST00000254950 RBMY1EA6NEQ0 496 aaKnown RBP8.46□□□□□ -1.06
VPS4A-201ENST00000254950 RBMY1DP0C7P1 496 aaKnown RBP8.46□□□□□ -1.06
VPS4A-201ENST00000254950 RNASE13Q5GAN3 156 aaKnown RBP8.46□□□□□ -1.06
VPS4A-201ENST00000254950 LINC01545Q5VT33 79 aa8.46□□□□□ -1.06
VPS4A-201ENST00000254950 C20orf203Q8NBC4 194 aa8.46□□□□□ -1.06
VPS4A-201ENST00000254950 TOMM6Q96B49 74 aa8.46□□□□□ -1.06
VPS4A-201ENST00000254950 SCRT2Q9NQ03 307 aa8.46□□□□□ -1.06
VPS4A-201ENST00000254950 RNF151Q2KHN1 245 aa8.45□□□□□ -1.06
VPS4A-201ENST00000254950 TIMM17AQ99595 171 aa8.45□□□□□ -1.06
VPS4A-201ENST00000254950 CITED1Q99966 193 aa8.45□□□□□ -1.06
VPS4A-201ENST00000254950 TRBV6-5A0A0K0K1A5 114 aa8.45□□□□□ -1.06
VPS4A-201ENST00000254950 IGLC3P0DOY3 106 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 HSD52Q0P140 79 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 NRACQ8N912 160 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 FAM19A4Q96LR4 140 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 IGHV4-28A0A0C4DH34 117 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 CRXO43186 299 aaPredicted RBP8.44□□□□□ -1.06
VPS4A-201ENST00000254950 ANGP03950 147 aaKnown RBP8.44□□□□□ -1.06
VPS4A-201ENST00000254950 EREGO14944 169 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 FGF6P10767 208 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 SPATA25Q9BR10 227 aa8.44□□□□□ -1.06
VPS4A-201ENST00000254950 SMIM13P0DJ93 91 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 HERVK_113P63121 156 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 GTF2H5Q6ZYL4 71 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 NEXN-AS1Q8NBZ9 246 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 TP73-AS1Q9UF72 201 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 TRBV6-4A0A1B0GX49 114 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 TMEM238C9JI98 176 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 H7C2G1 150 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 C6orf226Q5I0X4 101 aa8.43□□□□□ -1.06
VPS4A-201ENST00000254950 MYMXA0A1B0GTQ4 84 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 CKS1BP61024 79 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 RPL32P62910 135 aaKnown RBP8.42□□□□□ -1.06
VPS4A-201ENST00000254950 SLC25A29Q8N8R3 303 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 TRAV12-1A0A0B4J245 112 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 TRBV27A0A0K0K1C4 114 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 GAS8-AS1O95177 125 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 APOMO95445 188 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 C11orf45Q8TAV5 145 aa8.42□□□□□ -1.06
VPS4A-201ENST00000254950 A0A0U1RRA0 63 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 NXPH4O95158 308 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 COX8AP10176 69 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 PRIMA1Q86XR5 153 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 ORAOV1Q8WV07 137 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 BAALCQ8WXS3 180 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 LINC00467Q9BRT7 94 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 COX6CP09669 75 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 SPATA12Q7Z6I5 190 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 LOC107984156A0A0G2JMH3 177 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 A0A0J9YXV3 536 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 ARL17AQ8IVW1 177 aa8.41□□□□□ -1.06
VPS4A-201ENST00000254950 TRAV26-1A0A087WT03 109 aa8.4□□□□□ -1.06
VPS4A-201ENST00000254950 POLR2KP53803 58 aaKnown RBP8.4□□□□□ -1.06
VPS4A-201ENST00000254950 MAJINQ3KP22 176 aa8.4□□□□□ -1.06
VPS4A-201ENST00000254950 RNASE8Q8TDE3 154 aaKnown RBP8.4□□□□□ -1.06
VPS4A-201ENST00000254950 TEP1Q99973 2627 aaKnown RBP8.4□□□□□ -1.06
VPS4A-201ENST00000254950 FABP2P12104 132 aa8.4□□□□□ -1.06
VPS4A-201ENST00000254950 NHP2Q9NX24 153 aaKnown RBP8.4□□□□□ -1.06
VPS4A-201ENST00000254950 ODF1Q14990 250 aa8.4□□□□□ -1.07
VPS4A-201ENST00000254950 MRPS16Q9Y3D3 137 aaKnown RBP8.4□□□□□ -1.07
VPS4A-201ENST00000254950 CST9LQ9H4G1 147 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 LINC00158P58513 81 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 CLPSL2Q6UWE3 100 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 VSIG2Q96IQ7 327 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 C11orf68Q9H3H3 251 aaKnown RBP8.39□□□□□ -1.07
VPS4A-201ENST00000254950 TEX15Q9BXT5 2789 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 MPV17L2Q567V2 206 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 BAHCC1Q9P281 2608 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 J3QQQ9 107 aa8.39□□□□□ -1.07
VPS4A-201ENST00000254950 PRB2P02812 416 aaPredicted RBP8.38□□□□□ -1.07
VPS4A-201ENST00000254950 RPL24P83731 157 aaKnown RBP8.38□□□□□ -1.07
VPS4A-201ENST00000254950 RBMY1A1P0DJD3 496 aaKnown RBP8.38□□□□□ -1.07
VPS4A-201ENST00000254950 RBMY1CP0DJD4 496 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 RBMY1FQ15415 496 aaKnown RBP8.38□□□□□ -1.07
VPS4A-201ENST00000254950 CCL18P55774 89 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 LINC00310P59036 64 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 ANKRD39Q53RE8 183 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 WFDC9Q8NEX5 89 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 OR13C6PQ8NH95 151 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 NDUFA12Q9UI09 145 aa8.38□□□□□ -1.07
VPS4A-201ENST00000254950 NAA38Q9BRA0 125 aaKnown RBP8.37□□□□□ -1.07
VPS4A-201ENST00000254950 GCN1Q92616 2671 aaKnown RBP8.37□□□□□ -1.07
VPS4A-201ENST00000254950 ITPR2Q14571 2701 aa8.37□□□□□ -1.07
VPS4A-201ENST00000254950 PTH2Q96A98 100 aa8.37□□□□□ -1.07
VPS4A-201ENST00000254950 OPRPNQ99935 248 aaPredicted RBP8.37□□□□□ -1.07
VPS4A-201ENST00000254950 CELSR1Q9NYQ6 3014 aa8.37□□□□□ -1.07
VPS4A-201ENST00000254950 GAGE10A6NGK3 116 aa8.37□□□□□ -1.07
VPS4A-201ENST00000254950 SPINK8P0C7L1 97 aa8.36□□□□□ -1.07
VPS4A-201ENST00000254950 XCL1P47992 114 aa8.36□□□□□ -1.07
VPS4A-201ENST00000254950 UBE2WQ96B02 151 aa8.36□□□□□ -1.07
VPS4A-201ENST00000254950 CEMP1Q6PRD7 247 aaPredicted RBP8.36□□□□□ -1.07
VPS4A-201ENST00000254950 ZNF625Q96I27 306 aaPredicted RBP8.36□□□□□ -1.07
VPS4A-201ENST00000254950 DEFB131BA0A096LNP1 70 aa8.36□□□□□ -1.07
VPS4A-201ENST00000254950 Q6ZUT4 128 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms