RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TRGV11A0A075B6L2 103 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 LGALS9O00182 355 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 ZFAND6Q6FIF0 208 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 DGAT2L7PQ6IED9 249 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 ZFP2Q6ZN57 461 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 SPAG8Q99932 426 aaPredicted RBP6.28□□□□□ -1.4
VPS4B-201ENST00000238497 RETNQ9HD89 108 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 COX11Q9Y6N1 276 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 H7C1H1 209 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 TRGV2A0A075B6R0 118 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 C2orf91Q6ZV80 131 aa6.28□□□□□ -1.4
VPS4B-201ENST00000238497 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.27□□□□□ -1.41
VPS4B-201ENST00000238497 A0A087WX48 190 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 IGKV2-29A2NJV5 120 aaPredicted RBP6.27□□□□□ -1.41
VPS4B-201ENST00000238497 CRYGDP07320 174 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 HLA-DRB4P13762 266 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 ORAOV1Q8WV07 137 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 BAALCQ8WXS3 180 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 SPXQ9BT56 116 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 HLA-DRB4X5D2U9 266 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 TRBV25-1A0A075B6N4 114 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 A0A0U1RRA0 63 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 ZNF815PA8K554 130 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 F8VRH5 84 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 H7C2G1 150 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 CCL25O15444 150 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 FAM19A4Q96LR4 140 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 C20orf78Q9BR46 151 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 CHAC1Q9BUX1 264 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 NOP10Q9NPE3 64 aaKnown RBP6.27□□□□□ -1.41
VPS4B-201ENST00000238497 IGHV4-4A0A075B6R2 117 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE12BA1L429 117 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE7O76087 117 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 INSP01308 110 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE12FP0CL80 117 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE12GP0CL81 117 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE12IP0CL82 117 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 DEFB130BP0DP73 79 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 DEFB130AP0DP74 79 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 ODF3L2Q3SX64 289 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 AMTNQ6UX39 209 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 MTURNQ8N3F0 131 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 SPATA25Q9BR10 227 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 HHLA3Q9XRX5 114 aa6.27□□□□□ -1.41
VPS4B-201ENST00000238497 A6NDN8 102 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 APOMO95445 188 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 ZNRF2Q8NHG8 242 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 PRADC1Q9BSG0 188 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 VCX2Q9H322 139 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE10A6NGK3 116 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 DEFB4AO15263 64 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 PPP1R17O96001 155 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 FXYD2P54710 66 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 LINC00315P59091 139 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 NPC2P61916 151 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 ZNF415Q09FC8 603 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 Q6ZSN1 163 aa6.26□□□□□ -1.41
VPS4B-201ENST00000238497 C11orf86A6NJI1 115 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 M0QY20 66 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 TAX1BP3O14907 124 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 RRN3P1Q2M238 152 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 BOD1L2Q8IYS8 172 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 TOMM6Q96B49 74 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE12JA6NER3 117 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 PRSS2P07478 247 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE1Q13065 139 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE4Q13068 117 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE5Q13069 117 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 GAGE13Q4V321 117 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 TENM2Q9NT68 2774 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 A0A0J9YXV3 536 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 Q6ZTI0 123 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 TRPT1Q86TN4 253 aaKnown RBP6.25□□□□□ -1.41
VPS4B-201ENST00000238497 MUC7Q8TAX7 377 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 KIF25-AS1Q9Y6Z4 181 aa6.25□□□□□ -1.41
VPS4B-201ENST00000238497 A0A096LPF7 62 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 M0R2P5 195 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 FGF6P10767 208 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 PLNP26678 52 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 HSD52Q0P140 79 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 ZNF479Q96JC4 524 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 C9orf85Q96MD7 179 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 C19orf73Q9NVV2 129 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 I3L3M4 83 aa6.24□□□□□ -1.41
VPS4B-201ENST00000238497 SMIM13P0DJ93 91 aa6.23□□□□□ -1.41
VPS4B-201ENST00000238497 POLR2KP53803 58 aaKnown RBP6.23□□□□□ -1.41
VPS4B-201ENST00000238497 PMVKQ15126 192 aa6.23□□□□□ -1.41
VPS4B-201ENST00000238497 ZNF625Q96I27 306 aaPredicted RBP6.23□□□□□ -1.41
VPS4B-201ENST00000238497 TRBV7-9A0A0J9YWB2 115 aa6.23□□□□□ -1.41
VPS4B-201ENST00000238497 HERVK_113P61574 105 aa6.23□□□□□ -1.41
VPS4B-201ENST00000238497 UBE2V1Q13404 147 aa6.23□□□□□ -1.41
VPS4B-201ENST00000238497 MORN3Q6PF18 240 aaPredicted RBP6.23□□□□□ -1.41
VPS4B-201ENST00000238497 NEXN-AS1Q8NBZ9 246 aa6.23□□□□□ -1.41
VPS4B-201ENST00000238497 TRAV13-1A0A0B4J241 112 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 TRAV25A0A0B4J276 109 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 LOC107984156A0A0G2JMH3 177 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 A8MZ25 164 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 LGALS3P17931 250 aaKnown RBP6.22□□□□□ -1.41
VPS4B-201ENST00000238497 DEFB135Q30KP9 77 aa6.22□□□□□ -1.41
VPS4B-201ENST00000238497 ARL17AQ8IVW1 177 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms