RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CCL13Q99616 98 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 CNFNQ9BYD5 112 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 CREBBPQ92793 2442 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 IGHV3-72A0A0B4J1Y9 119 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 HOXD3P31249 432 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-216ENST00000637968 ESRGQ1W209 222 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 PLA2G2CQ5R387 149 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 PCSK5Q92824 1860 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 IGHV3-30-3P0DP02 117 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 HOXB4P17483 251 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-216ENST00000637968 C11orf44Q8N8P7 122 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 MRPL36Q9P0J6 103 aaKnown RBP4.33□□□□□ -1.72
SCN1A-216ENST00000637968 UBE2D4Q9Y2X8 147 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 PRR14LQ5THK1 2151 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 IGLV3-12A0A075B6K2 115 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 A0A0J9YXV3 536 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 H0YGX0 51 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 BCE1O60756 84 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 MIFP14174 115 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 CFHR3Q02985 330 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 C17orf82Q86X59 251 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-216ENST00000637968 RMI2Q96E14 147 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 ROS1P08922 2347 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 JMJD7-PLA2G4BH0Y9G9 81 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 J3QKU1 62 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 NDUFS5O43920 106 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 ZNF876PQ49A33 203 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 ORMDL1Q9P0S3 153 aa4.33□□□□□ -1.72
SCN1A-216ENST00000637968 RNASE6Q93091 150 aaKnown RBP4.32□□□□□ -1.72
SCN1A-216ENST00000637968 CTSZQ9UBR2 303 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 ADAMTS20P59510 1910 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 IGHV1-69P01742 117 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 ZNF80P51504 273 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-216ENST00000637968 RPL39P62891 51 aaKnown RBP4.32□□□□□ -1.72
SCN1A-216ENST00000637968 IGFL4Q6B9Z1 124 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 LINC00846Q9NV44 126 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 IGLV4-69A0A075B6H9 119 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 MRPL53Q96EL3 112 aaKnown RBP4.32□□□□□ -1.72
SCN1A-216ENST00000637968 PRO3102Q9H379 93 aa4.32□□□□□ -1.72
SCN1A-216ENST00000637968 IGHV1OR15-1A0A075B7D0 117 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 CCL19Q99731 98 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 NOTCH3Q9UM47 2321 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 APOC4P55056 127 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 PIK3CD-AS1Q5SR53 167 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 DOCK10Q96BY6 2186 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 IGKV3D-20A0A0C4DH25 116 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 TRBV27A0A0K0K1C4 114 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 H7BZZ5 65 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 HILS1P60008 231 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 WFDC9Q8NEX5 89 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 FSTL3O95633 263 aa4.31□□□□□ -1.72
SCN1A-216ENST00000637968 TNCP24821 2201 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 CLEC19AQ6UXS0 136 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 FP248Q71RG6 208 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-216ENST00000637968 CADP27708 2225 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 PCNX2A6NKB5 2137 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 OXLD1Q5BKU9 147 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 C19orf54Q5BKX5 351 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 ZNF491Q8N8L2 437 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 S4R3C0 116 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 SRRM5B3KS81 715 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 BUB1B-PAK6H3BSN5 160 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 HIST2H2BCQ6DN03 193 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 HIST2H2BDQ6DRA6 164 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 PLXNB1O43157 2135 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 TRBV10-3A0A0K0K1G6 114 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 Q6ZSV7 163 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 C1orf158Q8N1D5 194 aa4.3□□□□□ -1.72
SCN1A-216ENST00000637968 IGKV1D-17A0A075B6S4 117 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 ADAMTSL4-AS1Q5T5F5 129 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 Q9UF83 564 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 H3BS24 57 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 RPL28P46779 137 aaKnown RBP4.29□□□□□ -1.72
SCN1A-216ENST00000637968 RPL36AP83881 106 aaKnown RBP4.29□□□□□ -1.72
SCN1A-216ENST00000637968 C17orf58Q2M2W7 97 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 LINC01560Q8TB33 94 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 RPL36ALQ969Q0 106 aaKnown RBP4.29□□□□□ -1.72
SCN1A-216ENST00000637968 IGKV3D-15A0A087WSY6 115 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 NCR3O14931 201 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 LECT2O14960 151 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 IGKV3-15P01624 115 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 KLKP1Q107X0 134 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 BEAN1Q3B7T3 259 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 ZNF833PQ6ZTB9 187 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 KTN1-AS1Q86SY8 53 aa4.29□□□□□ -1.72
SCN1A-216ENST00000637968 IGHV3-35A0A0C4DH35 117 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 UBE2AP49459 152 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 GGNQ86UU5 652 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 SPRR3Q9UBC9 169 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 NOTCH2Q04721 2471 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 TMEM256-PLSCR3K7ERE1 68 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 WT1P19544 449 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-216ENST00000637968 RNASE4P34096 147 aaKnown RBP4.28□□□□□ -1.72
SCN1A-216ENST00000637968 DSCR9P59020 149 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 Q6ZRU5 148 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 ACACBO00763 2458 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 A0A087WZ39 114 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 IGIPA6NJ69 53 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 E7EUB6 86 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 IGKV1-17P01599 117 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms