RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 A0A096LNJ9 63 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 LOC389332A0A1B0GUA5 103 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 VCYO14598 125 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 GAS8-AS1O95177 125 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 GATA1P15976 413 aaPredicted RBP7.59□□□□□ -1.19
CLN3-248ENST00000636355 BTF3P20290 206 aaKnown RBP7.59□□□□□ -1.19
CLN3-248ENST00000636355 FCER1GP30273 86 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 POLR2KP53803 58 aaKnown RBP7.59□□□□□ -1.19
CLN3-248ENST00000636355 LAGE3Q14657 143 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 SPATA12Q7Z6I5 190 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 FAM19A2Q8N3H0 131 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 OR4C5Q8NGB2 326 aa7.59□□□□□ -1.19
CLN3-248ENST00000636355 C20orf202A1L168 122 aa7.58□□□□□ -1.2
CLN3-248ENST00000636355 SDHAF1A6NFY7 115 aa7.58□□□□□ -1.2
CLN3-248ENST00000636355 KRTAP10-11P60412 298 aa7.58□□□□□ -1.2
CLN3-248ENST00000636355 RHOHQ15669 191 aa7.58□□□□□ -1.2
CLN3-248ENST00000636355 KPRPQ5T749 579 aaPredicted RBP7.58□□□□□ -1.2
CLN3-248ENST00000636355 Q6ZTI0 123 aa7.58□□□□□ -1.2
CLN3-248ENST00000636355 RNF183Q96D59 192 aa7.58□□□□□ -1.2
CLN3-248ENST00000636355 RPL39LQ96EH5 51 aaKnown RBP7.58□□□□□ -1.2
CLN3-248ENST00000636355 NOP10Q9NPE3 64 aaKnown RBP7.58□□□□□ -1.2
CLN3-248ENST00000636355 TRRAPQ9Y4A5 3859 aa7.57□□□□□ -1.2
CLN3-248ENST00000636355 ATP5LO75964 103 aa7.57□□□□□ -1.2
CLN3-248ENST00000636355 DEFB135Q30KP9 77 aa7.57□□□□□ -1.2
CLN3-248ENST00000636355 PET117Q6UWS5 81 aa7.57□□□□□ -1.2
CLN3-248ENST00000636355 MAP1LC3CQ9BXW4 147 aa7.57□□□□□ -1.2
CLN3-248ENST00000636355 PKD1L1Q8TDX9 2849 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 TRGV2A0A075B6R0 118 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 TRBV6-4A0A1B0GX49 114 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 K7EQD1 137 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 PRM2P04554 102 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 C3orf79P0CE67 100 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 KRTDAPP60985 99 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 S100A12P80511 92 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 PMCHL1Q16048 86 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 NBEAL1Q6ZS30 2694 aa7.56□□□□□ -1.2
CLN3-248ENST00000636355 SYS1-DBNDD2H3BUS1 97 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 I3L3M4 83 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 NPSP0C0P6 89 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 TEX43Q6ZNM6 134 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 Q8NAQ8 132 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 OR11H2Q8NH07 326 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 TOMM6Q96B49 74 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 TNFRSF18Q9Y5U5 241 aa7.55□□□□□ -1.2
CLN3-248ENST00000636355 G3V4G9 280 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 SCGB1D1O95968 90 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 NUDT3O95989 172 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 NEXN-AS1Q8NBZ9 246 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 IFI27L1Q96BM0 104 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 ZNF479Q96JC4 524 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 C11orf68Q9H3H3 251 aaKnown RBP7.54□□□□□ -1.2
CLN3-248ENST00000636355 CYSLTR1Q9Y271 337 aa7.54□□□□□ -1.2
CLN3-248ENST00000636355 IGHV4-28A0A0C4DH34 117 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 GAGE12BA1L429 117 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 GAGE7O76087 117 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 GAGE12FP0CL80 117 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 GAGE12GP0CL81 117 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 GAGE12IP0CL82 117 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 RPL36AP83881 106 aaKnown RBP7.53□□□□□ -1.2
CLN3-248ENST00000636355 LINC01545Q5VT33 79 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 DAZ4Q86SG3 579 aaKnown RBP7.53□□□□□ -1.2
CLN3-248ENST00000636355 RPL36ALQ969Q0 106 aaKnown RBP7.53□□□□□ -1.2
CLN3-248ENST00000636355 TIMM17AQ99595 171 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 DAZ3Q9NR90 486 aaKnown RBP7.53□□□□□ -1.2
CLN3-248ENST00000636355 NOTCH1P46531 2555 aa7.53□□□□□ -1.2
CLN3-248ENST00000636355 MGAM2Q2M2H8 2515 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 TRBV7-3A0A075B6L6 115 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.52□□□□□ -1.21
CLN3-248ENST00000636355 TSHBP01222 138 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 LGALS9CQ6DKI2 356 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 C2orf66Q6UXQ4 117 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 ERASQ7Z444 233 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 Q8N976 141 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 PRADC1Q9BSG0 188 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 DKK2Q9UBU2 259 aa7.52□□□□□ -1.21
CLN3-248ENST00000636355 IGHV3-73A0A0B4J1V6 119 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 TRGV4A0A0C4DH28 118 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 SPART-AS1P0CW21 52 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 CRYBA4P53673 196 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 SMAGPQ0VAQ4 97 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 COTL1Q14019 142 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 TMEM97Q5BJF2 176 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 FAM222AQ5U5X8 452 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 SLC25A29Q8N8R3 303 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 TMEM141Q96I45 108 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 ZMAT4Q9H898 229 aa7.51□□□□□ -1.21
CLN3-248ENST00000636355 TRAV12-1A0A0B4J245 112 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 LINC00694P0DN24 101 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 UBE2D3P61077 147 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 UBE2D2P62837 147 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 PAPPA-AS1Q5QFB9 102 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 Q6ZSN1 163 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 LINC00173Q6ZV60 143 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 C20orf203Q8NBC4 194 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 VAMP8Q9BV40 100 aa7.5□□□□□ -1.21
CLN3-248ENST00000636355 TSTD3H0UI37 97 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 P0DMU3 169 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 FAM231AP0DMU4 169 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 FAM231CP0DMU5 169 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 EMP1P54849 157 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms