RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 NSD1Q96L73 2696 aaPredicted RBP14.31□□□□□ -0.12
CHRNA4-209ENST00000627000 IGHV3-73A0A0B4J1V6 119 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 K7EMI3 77 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 ZNF415Q09FC8 603 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 C2orf66Q6UXQ4 117 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 C11orf72Q8NBR9 251 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 RPL32P62910 135 aaKnown RBP14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 NDUFA11Q86Y39 141 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 C1orf158Q8N1D5 194 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 ZMAT4Q9H898 229 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 HIVEP1P15822 2718 aa14.3□□□□□ -0.12
CHRNA4-209ENST00000627000 IGHV3OR16-12A0A075B7B8 117 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 AZU1P20160 251 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 SCGB3A1Q96QR1 104 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 NACAE9PAV3 2078 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 TRBV6-5A0A0K0K1A5 114 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 M0R2P5 195 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 LINC00467Q9BRT7 94 aa14.29□□□□□ -0.12
CHRNA4-209ENST00000627000 C2CD3Q4AC94 2353 aa14.28□□□□□ -0.12
CHRNA4-209ENST00000627000 VCYO14598 125 aa14.28□□□□□ -0.12
CHRNA4-209ENST00000627000 COX8AP10176 69 aa14.28□□□□□ -0.12
CHRNA4-209ENST00000627000 ZFP2Q6ZN57 461 aa14.27□□□□□ -0.12
CHRNA4-209ENST00000627000 C19orf73Q9NVV2 129 aa14.27□□□□□ -0.12
CHRNA4-209ENST00000627000 MRPL35Q9NZE8 188 aaKnown RBP14.27□□□□□ -0.12
CHRNA4-209ENST00000627000 JMJD1CQ15652 2540 aa14.27□□□□□ -0.12
CHRNA4-209ENST00000627000 BEAN1Q3B7T3 259 aa14.27□□□□□ -0.13
CHRNA4-209ENST00000627000 MRPL16Q9NX20 251 aaKnown RBP14.27□□□□□ -0.13
CHRNA4-209ENST00000627000 HHLA3Q9XRX5 114 aa14.27□□□□□ -0.13
CHRNA4-209ENST00000627000 TRBV27A0A0K0K1C4 114 aa14.26□□□□□ -0.13
CHRNA4-209ENST00000627000 IGKCP01834 107 aa14.26□□□□□ -0.13
CHRNA4-209ENST00000627000 SEC11AP67812 179 aa14.26□□□□□ -0.13
CHRNA4-209ENST00000627000 PF4P02776 101 aa14.26□□□□□ -0.13
CHRNA4-209ENST00000627000 RNF151Q2KHN1 245 aa14.26□□□□□ -0.13
CHRNA4-209ENST00000627000 A0A087WX48 190 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 P0DMU3 169 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 FAM231AP0DMU4 169 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 FAM231CP0DMU5 169 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 FGF6P10767 208 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 UFSP1Q6NVU6 142 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 KIR2DL4Q99706 377 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 CST9LQ9H4G1 147 aa14.25□□□□□ -0.13
CHRNA4-209ENST00000627000 DPM2O94777 84 aa14.24□□□□□ -0.13
CHRNA4-209ENST00000627000 TP53TG1Q9Y2A0 90 aa14.24□□□□□ -0.13
CHRNA4-209ENST00000627000 GIG44P09565 113 aaPredicted RBP14.24□□□□□ -0.13
CHRNA4-209ENST00000627000 RPL39P62891 51 aaKnown RBP14.24□□□□□ -0.13
CHRNA4-209ENST00000627000 LINC00482Q8N8I6 264 aa14.24□□□□□ -0.13
CHRNA4-209ENST00000627000 A8MWV9 139 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 Q6ZSN1 163 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 NEXN-AS1Q8NBZ9 246 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 K7ERU9 68 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 RPL35AP18077 110 aaKnown RBP14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 NMUP48645 174 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 CMC4P56277 68 aaPredicted RBP14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 OCIAD2Q56VL3 154 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 CFAP126Q5VTH2 177 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 C2orf91Q6ZV80 131 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 ERASQ7Z444 233 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 SPATA3Q8NHX4 192 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 BAALCQ8WXS3 180 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 VPS25Q9BRG1 176 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 Q9UF83 564 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 CYSLTR1Q9Y271 337 aa14.23□□□□□ -0.13
CHRNA4-209ENST00000627000 IGKV2D-26A0A0A0MRZ7 120 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 CRLF1O75462 422 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 AMMECR1LQ6DCA0 310 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 PCP2Q8IVA1 136 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 PTH2Q96A98 100 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 SPXQ9BT56 116 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 TRAV12-1A0A0B4J245 112 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 ZC2HC1BQ5TFG8 222 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 GTSCR1Q86UQ5 136 aa14.22□□□□□ -0.13
CHRNA4-209ENST00000627000 A6NDN8 102 aa14.21□□□□□ -0.13
CHRNA4-209ENST00000627000 TSHBP01222 138 aa14.21□□□□□ -0.13
CHRNA4-209ENST00000627000 PIK3CD-AS1Q5SR53 167 aa14.21□□□□□ -0.13
CHRNA4-209ENST00000627000 GTF2H5Q6ZYL4 71 aa14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 FAM110AQ9BQ89 295 aa14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 H7C1H1 209 aa14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 RIPPLY3P57055 190 aa14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 TMEM97Q5BJF2 176 aa14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 BOD1L2Q8IYS8 172 aa14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 CHTOPQ9Y3Y2 248 aaKnown RBP14.2□□□□□ -0.14
CHRNA4-209ENST00000627000 IGIPA6NJ69 53 aa14.19□□□□□ -0.14
CHRNA4-209ENST00000627000 F8VRH5 84 aa14.19□□□□□ -0.14
CHRNA4-209ENST00000627000 EDA2RQ9HAV5 297 aa14.19□□□□□ -0.14
CHRNA4-209ENST00000627000 NOTCH3Q9UM47 2321 aa14.19□□□□□ -0.14
CHRNA4-209ENST00000627000 IL17DQ8TAD2 202 aa14.19□□□□□ -0.14
CHRNA4-209ENST00000627000 TTTY13Q9BZ97 58 aa14.19□□□□□ -0.14
CHRNA4-209ENST00000627000 PRSS29PA6NIE9 313 aa14.18□□□□□ -0.14
CHRNA4-209ENST00000627000 I3L3M4 83 aa14.17□□□□□ -0.14
CHRNA4-209ENST00000627000 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.17□□□□□ -0.14
CHRNA4-209ENST00000627000 RS1O15537 224 aa14.17□□□□□ -0.14
CHRNA4-209ENST00000627000 TRGV1A0A0A0MS02 117 aa14.16□□□□□ -0.14
CHRNA4-209ENST00000627000 GAGE12BA1L429 117 aa14.16□□□□□ -0.14
CHRNA4-209ENST00000627000 SIVA1O15304 175 aa14.16□□□□□ -0.14
CHRNA4-209ENST00000627000 PLNP26678 52 aa14.16□□□□□ -0.14
CHRNA4-209ENST00000627000 H3BRM9 83 aa14.16□□□□□ -0.14
CHRNA4-209ENST00000627000 GAGE10A6NGK3 116 aa14.15□□□□□ -0.14
CHRNA4-209ENST00000627000 RHOHQ15669 191 aa14.15□□□□□ -0.14
CHRNA4-209ENST00000627000 RHODO00212 210 aa14.15□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms