RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 IMUPQ9GZP8 106 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 VPREB3Q9UKI3 123 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 ABCA12Q86UK0 2595 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 ASH1LQ9NR48 2969 aaKnown RBP8.15□□□□□ -1.1
UPF3A-212ENST00000619079 C15orf32Q32M92 178 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 ZNRF2Q8NHG8 242 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 SPG11Q96JI7 2443 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 CSMD1Q96PZ7 3565 aa8.15□□□□□ -1.1
UPF3A-212ENST00000619079 CLPSL1A2RUU4 121 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 B9A039 149 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 EIF4EBP3O60516 100 aaPredicted RBP8.14□□□□□ -1.11
UPF3A-212ENST00000619079 IGHV1-69P01742 117 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 DEFB121Q5J5C9 76 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 UNC79Q9P2D8 2635 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 TMEM223A0PJW6 202 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 TRIAP1O43715 76 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 NXPH4O95158 308 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 POLR2KP53803 58 aaKnown RBP8.14□□□□□ -1.11
UPF3A-212ENST00000619079 ZNF56Q15929 161 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 KLK9Q2XQG4 91 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 PRR9Q5T870 116 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 FAM110DQ8TAY7 271 aaPredicted RBP8.14□□□□□ -1.11
UPF3A-212ENST00000619079 C16orf92Q96LL3 132 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 KLK9Q9UKQ9 250 aa8.14□□□□□ -1.11
UPF3A-212ENST00000619079 IGHV3-66A0A0C4DH42 116 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 OOSP1A8MZH6 123 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 ACYP1P07311 99 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 C1orf122Q6ZSJ8 110 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 LY6G5BQ8NDX9 201 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 ELANEP08246 267 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 LINC01587Q99440 93 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 SPANXCQ9NY87 97 aa8.13□□□□□ -1.11
UPF3A-212ENST00000619079 ODF3BA8MYP8 253 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 H7C423 109 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 OVOL1O14753 267 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 Q8N6K4 173 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 ZFAND2AQ8N6M9 145 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 ICOSQ9Y6W8 199 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 NOTCH2Q04721 2471 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 M0R1W7 72 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 RPL39P62891 51 aaKnown RBP8.12□□□□□ -1.11
UPF3A-212ENST00000619079 DNAJC30Q96LL9 226 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 CHCHD5Q9BSY4 110 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 BEX4Q9NWD9 120 aaPredicted RBP8.12□□□□□ -1.11
UPF3A-212ENST00000619079 U3KQE9 123 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 POLQO75417 2590 aa8.12□□□□□ -1.11
UPF3A-212ENST00000619079 IGHV7-81A0A0B4J1V7 117 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 TRBV27A0A0K0K1C4 114 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 ATP5G1P05496 136 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 EBI3Q14213 229 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 APCP25054 2843 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 TRBV6-5A0A0K0K1A5 114 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 RHOHQ15669 191 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 EEF1AKMT3Q96AZ1 226 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 KIF25-AS1Q9Y6Z4 181 aa8.11□□□□□ -1.11
UPF3A-212ENST00000619079 TRBV7-1A0A0A6YYK4 115 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 A0A0J9YXY3 114 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 C11orf71Q6IPW1 123 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 NAV2Q8IVL1 2488 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 IGHV3OR16-13A0A075B7E8 117 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 IGHV3-74A0A0B4J1X5 117 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 LST1O00453 97 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 RNASE3P12724 160 aaKnown RBP8.1□□□□□ -1.11
UPF3A-212ENST00000619079 ATP5J2P56134 94 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 LINC00315P59091 139 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 NSUN5P1Q3KNT7 163 aa8.1□□□□□ -1.11
UPF3A-212ENST00000619079 TRGV11A0A075B6L2 103 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 J3KRW8 73 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 ZNF22P17026 224 aaPredicted RBP8.09□□□□□ -1.11
UPF3A-212ENST00000619079 SUMO4Q6EEV6 95 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 CLEC19AQ6UXS0 136 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 APRG1Q8IVJ8 170 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 CCDC140Q96MF4 163 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 PPDPFQ9H3Y8 114 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 FAM236AA0A1B0GUQ0 79 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 FAM236BA0A1B0GV22 79 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 UQCRQO14949 82 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 LY6HO94772 140 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 DEFB113Q30KQ7 82 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 C9orf153Q5TBE3 101 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 MINOS1Q5TGZ0 78 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 ZNF256Q9Y2P7 627 aaPredicted RBP8.09□□□□□ -1.11
UPF3A-212ENST00000619079 MINOS1-NBL1R4GNA1 71 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 ITPR2Q14571 2701 aa8.09□□□□□ -1.11
UPF3A-212ENST00000619079 VPS13CQ709C8 3753 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 LYNX1G3V0Z9 82 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 SPRY2O43597 315 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 NDUFA7O95182 113 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 IGF1P05019 195 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 LYNX1P0DP58 116 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 UBE2E1P51965 193 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 C3orf22Q8N5N4 141 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 IGHV3-49A0A0A0MS15 119 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 RNASE4P34096 147 aaKnown RBP8.08□□□□□ -1.12
UPF3A-212ENST00000619079 ECSCRQ19T08 205 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 FAM19A4Q96LR4 140 aa8.08□□□□□ -1.12
UPF3A-212ENST00000619079 F5H697 171 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 VMO1Q7Z5L0 202 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 Q8N9W7 124 aa8.07□□□□□ -1.12
UPF3A-212ENST00000619079 C20orf173Q96LM9 149 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms