RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 HIVEP3Q5T1R4 2406 aa7.73□□□□□ -1.17
VPS39-214ENST00000614932 LYZP61626 148 aa7.73□□□□□ -1.17
VPS39-214ENST00000614932 LINC00574Q9H8X3 128 aa7.73□□□□□ -1.17
VPS39-214ENST00000614932 C11orf86A6NJI1 115 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 M0R3E3 92 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 DCANP1Q8TF63 244 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 AMELXQ99217 191 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 CGB1A6NKQ9 187 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 EPM2AB3EWF7 344 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 SYNJ2BPP57105 145 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 ZNF575Q86XF7 245 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 SMIM2Q9BVW6 85 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 SIRPDQ9H106 197 aa7.72□□□□□ -1.17
VPS39-214ENST00000614932 TRAV12-2A0A075B6T6 113 aa7.71□□□□□ -1.17
VPS39-214ENST00000614932 LGALS3P17931 250 aaKnown RBP7.71□□□□□ -1.17
VPS39-214ENST00000614932 CLEC2BQ92478 149 aa7.71□□□□□ -1.17
VPS39-214ENST00000614932 TRAV26-2A0A0B4J265 109 aa7.71□□□□□ -1.18
VPS39-214ENST00000614932 UBE2E1P51965 193 aa7.71□□□□□ -1.18
VPS39-214ENST00000614932 CACNA1BQ00975 2339 aa7.71□□□□□ -1.18
VPS39-214ENST00000614932 CSMD2Q7Z408 3487 aa7.71□□□□□ -1.18
VPS39-214ENST00000614932 NBR2O15453 112 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 NDUFC2O95298 119 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 IGLV2-23P01705 113 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 TRAV8-3A0A0A6YYJ7 113 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 ZNF80P51504 273 aaPredicted RBP7.7□□□□□ -1.18
VPS39-214ENST00000614932 C2orf66Q6UXQ4 117 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 LINC01561Q8N1V8 128 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 WFDC11Q8NEX6 87 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 TIMM21Q9BVV7 248 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 IGLV4-69A0A075B6H9 119 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 A0A0U1RQV1 116 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 TRGV3P03979 118 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 C20orf173Q96LM9 149 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 SERP1Q9Y6X1 66 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 S4R3C0 116 aa7.7□□□□□ -1.18
VPS39-214ENST00000614932 A0A1W2PPR1 153 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 A0A1W2PRX2 142 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 AVPP01185 164 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 FHL2Q14192 279 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 PSMG3-AS1Q96PY0 264 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 C16orf95Q9H693 158 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 TP53TG1Q9Y2A0 90 aa7.69□□□□□ -1.18
VPS39-214ENST00000614932 C6orf226Q5I0X4 101 aa7.68□□□□□ -1.18
VPS39-214ENST00000614932 C16orf92Q96LL3 132 aa7.68□□□□□ -1.18
VPS39-214ENST00000614932 KAAG1Q9UBP8 84 aa7.68□□□□□ -1.18
VPS39-214ENST00000614932 IGHV1-3A0A0C4DH29 117 aa7.68□□□□□ -1.18
VPS39-214ENST00000614932 VMA21Q3ZAQ7 101 aa7.68□□□□□ -1.18
VPS39-214ENST00000614932 TMEM167AQ8TBQ9 72 aa7.68□□□□□ -1.18
VPS39-214ENST00000614932 BUB1B-PAK6H3BSN5 160 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 MRGPRG-AS1Q2M3A8 158 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 PKD1L2Q7Z442 2459 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 SPG11Q96JI7 2443 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 CRYBG3Q68DQ2 2970 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 C9orf139Q6ZV77 190 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 DAND5Q8N907 189 aa7.67□□□□□ -1.18
VPS39-214ENST00000614932 IGKV2-40A0A087WW87 121 aaPredicted RBP7.66□□□□□ -1.18
VPS39-214ENST00000614932 IGKV2D-40P01614 121 aaPredicted RBP7.66□□□□□ -1.18
VPS39-214ENST00000614932 BRK1Q8WUW1 75 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 UTP20O75691 2785 aaKnown RBP7.66□□□□□ -1.18
VPS39-214ENST00000614932 PIEZO1Q92508 2521 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 I3L3M4 83 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 IGLV1-47P01700 117 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 PRSS2P07478 247 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 TMEM30BQ3MIR4 351 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 TMEM243Q9BU79 118 aa7.66□□□□□ -1.18
VPS39-214ENST00000614932 SMIM26A0A096LP01 95 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 H3BRN7 92 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 RPL27AP46776 148 aaKnown RBP7.65□□□□□ -1.18
VPS39-214ENST00000614932 SUMO2P61956 95 aaKnown RBP7.65□□□□□ -1.18
VPS39-214ENST00000614932 PDE6HQ13956 83 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 PVRIGQ6DKI7 326 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 IL17DQ8TAD2 202 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 Q8TAT8 98 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 USP17L23D6RBM5 183 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 ZNF491Q8N8L2 437 aa7.65□□□□□ -1.18
VPS39-214ENST00000614932 LEPROTO15243 131 aa7.65□□□□□ -1.19
VPS39-214ENST00000614932 C19orf84I3L1E1 186 aa7.64□□□□□ -1.19
VPS39-214ENST00000614932 A0A0U1RRA0 63 aa7.64□□□□□ -1.19
VPS39-214ENST00000614932 BUB3O43684 328 aa7.64□□□□□ -1.19
VPS39-214ENST00000614932 GNLYP22749 145 aa7.64□□□□□ -1.19
VPS39-214ENST00000614932 FBXL19-AS1Q494R0 122 aa7.64□□□□□ -1.19
VPS39-214ENST00000614932 SLC50A1Q9BRV3 221 aa7.64□□□□□ -1.19
VPS39-214ENST00000614932 CFAP46Q8IYW2 2715 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 SDHAF1A6NFY7 115 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 DAZ2Q13117 558 aaKnown RBP7.63□□□□□ -1.19
VPS39-214ENST00000614932 DAZ4Q86SG3 579 aaKnown RBP7.63□□□□□ -1.19
VPS39-214ENST00000614932 FAM223AQ8IWN6 122 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 DAZ1Q9NQZ3 744 aaKnown RBP7.63□□□□□ -1.19
VPS39-214ENST00000614932 DAZ3Q9NR90 486 aaKnown RBP7.63□□□□□ -1.19
VPS39-214ENST00000614932 A0A0J9YX75 114 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 TSHBP01222 138 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 ZFP36P26651 326 aaKnown RBP7.63□□□□□ -1.19
VPS39-214ENST00000614932 TIRAPP58753 221 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 FP248Q71RG6 208 aaPredicted RBP7.63□□□□□ -1.19
VPS39-214ENST00000614932 DYNAPQ8N1N2 210 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 ZFYVE26Q68DK2 2539 aa7.63□□□□□ -1.19
VPS39-214ENST00000614932 IGHV1-69DA0A0B4J2H0 117 aa7.62□□□□□ -1.19
VPS39-214ENST00000614932 IGHV3-23P01764 117 aa7.62□□□□□ -1.19
VPS39-214ENST00000614932 INAFM2P0DMQ5 153 aa7.62□□□□□ -1.19
VPS39-214ENST00000614932 Q6JHZ5 121 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms