RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 Q9UF83 564 aa10.14□□□□□ -0.79
USP39-220ENST00000613444 P0DMU3 169 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 FAM231AP0DMU4 169 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 FAM231CP0DMU5 169 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 FAM222AQ5U5X8 452 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 SBSPONQ8IVN8 264 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 Q8N8P6 123 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 SMIM2Q9BVW6 85 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 AP5S1Q9NUS5 200 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 DKK2Q9UBU2 259 aa10.13□□□□□ -0.79
USP39-220ENST00000613444 TRGV2A0A075B6R0 118 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 LYRM9A8MSI8 78 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 HSBP1O75506 76 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 POLR2KP53803 58 aaKnown RBP10.12□□□□□ -0.79
USP39-220ENST00000613444 FA2HQ7L5A8 372 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 PACRGQ96M98 296 aaPredicted RBP10.12□□□□□ -0.79
USP39-220ENST00000613444 NXT2Q9NPJ8 142 aaKnown RBP10.12□□□□□ -0.79
USP39-220ENST00000613444 NIT2Q9NQR4 276 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 IGHV1-24A0A0C4DH33 117 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 RPL32P62910 135 aaKnown RBP10.12□□□□□ -0.79
USP39-220ENST00000613444 PMCHL1Q16048 86 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 TMEM18Q96B42 140 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 TMEM70Q9BUB7 260 aa10.12□□□□□ -0.79
USP39-220ENST00000613444 A0A096LNJ9 63 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 PMCHP20382 165 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 AMTP48728 403 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 CELA1Q9UNI1 258 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 DNAH9Q9NYC9 4486 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 H7C1H1 209 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 DEFB130BP0DP73 79 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 DEFB130AP0DP74 79 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 ST20Q9HBF5 79 aa10.11□□□□□ -0.79
USP39-220ENST00000613444 CIDEAO60543 219 aa10.1□□□□□ -0.79
USP39-220ENST00000613444 TRBV27A0A0K0K1C4 114 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 SDHAF1A6NFY7 115 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 FHL2Q14192 279 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 NEXN-AS1Q8NBZ9 246 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 OR10D4PQ8NGN7 298 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 NEGR1Q7Z3B1 354 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 SLC25A29Q8N8R3 303 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 TM2D3Q9BRN9 247 aa10.09□□□□□ -0.79
USP39-220ENST00000613444 TCAPO15273 167 aa10.08□□□□□ -0.8
USP39-220ENST00000613444 DEFB121Q5J5C9 76 aa10.08□□□□□ -0.8
USP39-220ENST00000613444 AKR1D1P51857 326 aa10.08□□□□□ -0.8
USP39-220ENST00000613444 K7EQD1 137 aa10.07□□□□□ -0.8
USP39-220ENST00000613444 VCYO14598 125 aa10.07□□□□□ -0.8
USP39-220ENST00000613444 SPART-AS1P0CW21 52 aa10.07□□□□□ -0.8
USP39-220ENST00000613444 DNAJC30Q96LL9 226 aa10.07□□□□□ -0.8
USP39-220ENST00000613444 C11orf68Q9H3H3 251 aaKnown RBP10.07□□□□□ -0.8
USP39-220ENST00000613444 COL7A1Q02388 2944 aa10.06□□□□□ -0.8
USP39-220ENST00000613444 TRBV10-1A0A0K0K1A3 114 aa10.06□□□□□ -0.8
USP39-220ENST00000613444 TRBV6-4A0A1B0GX49 114 aa10.06□□□□□ -0.8
USP39-220ENST00000613444 K7EMI3 77 aa10.06□□□□□ -0.8
USP39-220ENST00000613444 LAGE3Q14657 143 aa10.06□□□□□ -0.8
USP39-220ENST00000613444 LINC00173Q6ZV60 143 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 MRAPQ8TCY5 172 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 TNFRSF18Q9Y5U5 241 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 TRGV4A0A0C4DH28 118 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 HBDP02042 147 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 FCER1GP30273 86 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 DAD1P61803 113 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 DEFB104AQ8WTQ1 72 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 SPATA25Q9BR10 227 aa10.05□□□□□ -0.8
USP39-220ENST00000613444 TSHBP01222 138 aa10.04□□□□□ -0.8
USP39-220ENST00000613444 PRKDCP78527 4128 aaKnown RBP10.04□□□□□ -0.8
USP39-220ENST00000613444 TRBV7-3A0A075B6L6 115 aa10.04□□□□□ -0.8
USP39-220ENST00000613444 I3L3M4 83 aa10.04□□□□□ -0.8
USP39-220ENST00000613444 LOC100131303A0A0U1RQF7 123 aa10.03□□□□□ -0.8
USP39-220ENST00000613444 LEPROTL1O95214 131 aa10.03□□□□□ -0.8
USP39-220ENST00000613444 ORMDL2Q53FV1 153 aa10.03□□□□□ -0.8
USP39-220ENST00000613444 ZNRF2Q8NHG8 242 aa10.03□□□□□ -0.8
USP39-220ENST00000613444 KIR2DL4Q99706 377 aa10.03□□□□□ -0.8
USP39-220ENST00000613444 HHLA3Q9XRX5 114 aa10.03□□□□□ -0.8
USP39-220ENST00000613444 A0A0J9YWU9 116 aa10.02□□□□□ -0.8
USP39-220ENST00000613444 TEX48A0A1B0GUV7 120 aa10.02□□□□□ -0.8
USP39-220ENST00000613444 RHOHQ15669 191 aa10.02□□□□□ -0.8
USP39-220ENST00000613444 C12orf74Q32Q52 190 aa10.02□□□□□ -0.8
USP39-220ENST00000613444 PYY3Q5JQD4 70 aa10.02□□□□□ -0.8
USP39-220ENST00000613444 LINC00694P0DN24 101 aa10.02□□□□□ -0.81
USP39-220ENST00000613444 CRYBA4P53673 196 aa10.02□□□□□ -0.81
USP39-220ENST00000613444 UBE2D3P61077 147 aa10.02□□□□□ -0.81
USP39-220ENST00000613444 UBE2D2P62837 147 aa10.02□□□□□ -0.81
USP39-220ENST00000613444 NUDT3O95989 172 aa10.01□□□□□ -0.81
USP39-220ENST00000613444 C3orf79P0CE67 100 aa10.01□□□□□ -0.81
USP39-220ENST00000613444 RPL36AP83881 106 aaKnown RBP10.01□□□□□ -0.81
USP39-220ENST00000613444 RPL36ALQ969Q0 106 aaKnown RBP10.01□□□□□ -0.81
USP39-220ENST00000613444 ATP5G1P05496 136 aa10.01□□□□□ -0.81
USP39-220ENST00000613444 BTF3P20290 206 aaKnown RBP10.01□□□□□ -0.81
USP39-220ENST00000613444 PRO0255Q9UI72 69 aa10.01□□□□□ -0.81
USP39-220ENST00000613444 IGHV3-38A0A0C4DH36 116 aa10□□□□□ -0.81
USP39-220ENST00000613444 GAGE12JA6NER3 117 aa10□□□□□ -0.81
USP39-220ENST00000613444 GAGE1Q13065 139 aa10□□□□□ -0.81
USP39-220ENST00000613444 GAGE4Q13068 117 aa10□□□□□ -0.81
USP39-220ENST00000613444 GAGE5Q13069 117 aa10□□□□□ -0.81
USP39-220ENST00000613444 JOSD1Q15040 202 aaPredicted RBP10□□□□□ -0.81
USP39-220ENST00000613444 GAGE13Q4V321 117 aa10□□□□□ -0.81
USP39-220ENST00000613444 Q8N976 141 aa10□□□□□ -0.81
USP39-220ENST00000613444 PHLDA1Q8WV24 401 aaPredicted RBP10□□□□□ -0.81
USP39-220ENST00000613444 HSPB8Q9UJY1 196 aa10□□□□□ -0.81
USP39-220ENST00000613444 MEGF8Q7Z7M0 2845 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms