RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LYPD5Q6UWN5 251 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 Q6ZS49 121 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 ZNF664Q8N3J9 261 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 MRPL30Q8TCC3 161 aaKnown RBP2.61□□□□□ -1.99
LINC00540-201ENST00000611481 DNAJC30Q96LL9 226 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM222Q9H0R3 208 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 ZNF331Q9NQX6 463 aaPredicted RBP2.61□□□□□ -1.99
LINC00540-201ENST00000611481 ABRACLQ9P1F3 81 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 KIF25-AS1Q9Y6Z4 181 aa2.61□□□□□ -1.99
LINC00540-201ENST00000611481 A0A1W2PRE2 83 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 LST1O00453 97 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 SLC17A3O00476 420 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 HLA-DQB1P01920 261 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 CTSGP08311 255 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 PTHLHP12272 177 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 DAPP51397 102 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 CCR6P51684 374 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 SNRPD3P62318 126 aaKnown RBP2.6□□□□□ -1.99
LINC00540-201ENST00000611481 SYCNQ0VAF6 134 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 HMGN3Q15651 99 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 FAM104BQ5XKR9 115 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM167AQ8TBQ9 72 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 SLC25A46Q96AG3 418 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 RMI2Q96E14 147 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 GPR82Q96P67 336 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 TSC22D3Q99576 134 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 SHANK2-AS3Q9BTD1 123 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 CCDC90BQ9GZT6 254 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 NOP10Q9NPE3 64 aaKnown RBP2.6□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM138Q9NPI0 162 aa2.6□□□□□ -1.99
LINC00540-201ENST00000611481 K7ERS5 55 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 COX7A2LO14548 114 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 ELK1P19419 428 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 CRHBPP24387 322 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 ATP6V0CP27449 155 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 G6PCP35575 357 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 OPRK1P41145 380 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 SMIM11AP58511 58 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 DEFA1P59665 94 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 SNRPGP62308 76 aaKnown RBP2.59□□□□□ -1.99
LINC00540-201ENST00000611481 PSG9Q00887 426 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 INSL4Q14641 139 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 KRTAP6-3Q3LI67 103 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 SP6Q3SY56 376 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 ZFP1Q6P2D0 407 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 LINC01551Q86U37 167 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 OR8J3Q8NGG0 315 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 SPANXCQ9NY87 97 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 TIMM8BQ9Y5J9 83 aaPredicted RBP2.59□□□□□ -1.99
LINC00540-201ENST00000611481 ICOSQ9Y6W8 199 aa2.59□□□□□ -1.99
LINC00540-201ENST00000611481 TRAV4A0A0B4J268 109 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 A8MUN3 132 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 IBA57-AS1B1ANH7 110 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 PHOX2AO14813 284 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 CYB5BO43169 146 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 IFNA7P01567 189 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 OR5AC1P0C628 307 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 HTN1P15515 57 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 SCGB2B2Q4G0G5 96 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 TNFAIP8L3Q5GJ75 292 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 TMEM244Q5VVB8 128 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 AMN1Q8IY45 258 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 C12orf45Q8N5I9 185 aaPredicted RBP2.58□□□□□ -2
LINC00540-201ENST00000611481 OR51A4Q8NGJ6 313 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 OR13C8Q8NGS7 320 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 RAB2BQ8WUD1 216 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 PLEKHB2Q96CS7 222 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 IGF2BP2-AS1Q96M15 143 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 S100A13Q99584 98 aa2.58□□□□□ -2
LINC00540-201ENST00000611481 WDR61Q9GZS3 305 aaKnown RBP2.58□□□□□ -2
LINC00540-201ENST00000611481 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 TRBV19A0A075B6N1 114 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 A0A1B0GW54 56 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 IGLC7A0M8Q6 106 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 ZNF670-ZNF695F2Z2N8 137 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 K7EIM0 57 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 FXYD1O00168 92 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 PITX3O75364 302 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 NPPCP23582 126 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 RPS10P46783 165 aaKnown RBP2.57□□□□□ -2
LINC00540-201ENST00000611481 TAS2R45P59539 299 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 RHEBQ15382 184 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 ZNF79Q15937 498 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 SPINK6Q6UWN8 80 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 FOXI2Q6ZQN5 318 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.57□□□□□ -2
LINC00540-201ENST00000611481 LINC00052Q96N35 136 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 NDFIP1Q9BT67 221 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 CCDC32Q9BV29 185 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 OR2D2Q9H210 308 aa2.57□□□□□ -2
LINC00540-201ENST00000611481 TRBV20OR9-2A0A075B6H5 130 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 TRBV6-6A0A0A6YYG2 114 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 ZNF98A6NK75 572 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 TMEM14DPA8MWL7 114 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 ZNF324O75467 553 aaPredicted RBP2.56□□□□□ -2
LINC00540-201ENST00000611481 CRYGAP11844 174 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 SERPINB10P48595 397 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 EIF2B2P49770 351 aaKnown RBP2.56□□□□□ -2
LINC00540-201ENST00000611481 AKR1C2P52895 323 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 MT1HP80294 61 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms