RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NACAE9PAV3 2078 aa13.7□□□□□ -0.22
UPF1-210ENST00000600689 NPFFO15130 113 aa13.7□□□□□ -0.22
UPF1-210ENST00000600689 CEMP1Q6PRD7 247 aaPredicted RBP13.7□□□□□ -0.22
UPF1-210ENST00000600689 POLR2KP53803 58 aaKnown RBP13.69□□□□□ -0.22
UPF1-210ENST00000600689 ACACBO00763 2458 aa13.68□□□□□ -0.22
UPF1-210ENST00000600689 A8MZ25 164 aa13.68□□□□□ -0.22
UPF1-210ENST00000600689 SNCGO76070 127 aa13.68□□□□□ -0.22
UPF1-210ENST00000600689 IGHV3-33P01772 117 aa13.68□□□□□ -0.22
UPF1-210ENST00000600689 KIF25-AS1Q9Y6Z4 181 aa13.68□□□□□ -0.22
UPF1-210ENST00000600689 GAGE2BQ13066 116 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 GAGE2EQ4V326 116 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 PAPPA-AS1Q5QFB9 102 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 GAGE2DQ9UEU5 116 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 TRAV8-3A0A0A6YYJ7 113 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 ZNF876PQ49A33 203 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 Q8N1Y9 231 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 AMELXQ99217 191 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 LENEPQ9Y5L5 61 aa13.67□□□□□ -0.22
UPF1-210ENST00000600689 BLCAPP62952 87 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 ZFYVE26Q68DK2 2539 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 MYO18BQ8IUG5 2567 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 C2CD3Q4AC94 2353 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 SOCS3O14543 225 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 PPP1R17O96001 155 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 C3orf56Q8N813 242 aa13.66□□□□□ -0.22
UPF1-210ENST00000600689 P0DMU3 169 aa13.65□□□□□ -0.22
UPF1-210ENST00000600689 FAM231AP0DMU4 169 aa13.65□□□□□ -0.22
UPF1-210ENST00000600689 FAM231CP0DMU5 169 aa13.65□□□□□ -0.22
UPF1-210ENST00000600689 CENPEQ02224 2701 aa13.65□□□□□ -0.22
UPF1-210ENST00000600689 PRM2P04554 102 aa13.65□□□□□ -0.23
UPF1-210ENST00000600689 TMEM95Q3KNT9 176 aa13.65□□□□□ -0.23
UPF1-210ENST00000600689 IGHV1-69DA0A0B4J2H0 117 aa13.64□□□□□ -0.23
UPF1-210ENST00000600689 TTC32Q5I0X7 151 aa13.64□□□□□ -0.23
UPF1-210ENST00000600689 CCDC179H3BU77 68 aa13.64□□□□□ -0.23
UPF1-210ENST00000600689 SPINK13Q1W4C9 94 aa13.64□□□□□ -0.23
UPF1-210ENST00000600689 TMEM263Q8WUH6 116 aaKnown RBP13.64□□□□□ -0.23
UPF1-210ENST00000600689 TMEM141Q96I45 108 aa13.64□□□□□ -0.23
UPF1-210ENST00000600689 DAND5Q8N907 189 aa13.63□□□□□ -0.23
UPF1-210ENST00000600689 VCX2Q9H322 139 aa13.63□□□□□ -0.23
UPF1-210ENST00000600689 MOB4Q9Y3A3 225 aa13.63□□□□□ -0.23
UPF1-210ENST00000600689 A0A0U1RRA0 63 aa13.63□□□□□ -0.23
UPF1-210ENST00000600689 LINC01620Q4KN68 170 aa13.63□□□□□ -0.23
UPF1-210ENST00000600689 KNCNA6PVL3 124 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 TMEM262E9PQX1 116 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 ZNF22P17026 224 aaPredicted RBP13.62□□□□□ -0.23
UPF1-210ENST00000600689 CLEC2BQ92478 149 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 TIMM17AQ99595 171 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 IGHV4-61A0A0C4DH41 118 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 NDUFA4O00483 81 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 TRIAP1O43715 76 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 PROK1P58294 105 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 GAGE5Q13069 117 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 GAGE6Q13070 117 aa13.62□□□□□ -0.23
UPF1-210ENST00000600689 NHLRC4P0CG21 123 aaPredicted RBP13.61□□□□□ -0.23
UPF1-210ENST00000600689 DUX5Q96PT3 197 aa13.61□□□□□ -0.23
UPF1-210ENST00000600689 DOPEY1Q5JWR5 2465 aa13.61□□□□□ -0.23
UPF1-210ENST00000600689 TMEM223A0PJW6 202 aa13.61□□□□□ -0.23
UPF1-210ENST00000600689 C15orf53Q8NAA6 179 aa13.61□□□□□ -0.23
UPF1-210ENST00000600689 IGHV4OR15-8A0A075B7B6 117 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 A0A087WW49 117 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 TRAV8-4A0A0B4J246 113 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 FAM223BA6NKX1 122 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 RHODO00212 210 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 SBSPONQ8IVN8 264 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 FAM223AQ8IWN6 122 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 PRRC2AP48634 2157 aaKnown RBP13.6□□□□□ -0.23
UPF1-210ENST00000600689 H3BUX3 64 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 C2orf82Q6UX34 121 aa13.6□□□□□ -0.23
UPF1-210ENST00000600689 LEPROTO15243 131 aa13.59□□□□□ -0.23
UPF1-210ENST00000600689 ATXN8Q156A1 80 aa13.59□□□□□ -0.23
UPF1-210ENST00000600689 SVIPQ8NHG7 77 aa13.59□□□□□ -0.23
UPF1-210ENST00000600689 DUX3Q96PT4 197 aa13.59□□□□□ -0.23
UPF1-210ENST00000600689 A0A0J9YXY3 114 aa13.59□□□□□ -0.23
UPF1-210ENST00000600689 CD28P10747 220 aa13.59□□□□□ -0.23
UPF1-210ENST00000600689 NDUFV3P56181 108 aaKnown RBP13.59□□□□□ -0.23
UPF1-210ENST00000600689 ZANQ9Y493 2812 aa13.58□□□□□ -0.23
UPF1-210ENST00000600689 NRGNQ92686 78 aa13.58□□□□□ -0.23
UPF1-210ENST00000600689 CCL19Q99731 98 aa13.58□□□□□ -0.23
UPF1-210ENST00000600689 Q9UF83 564 aa13.58□□□□□ -0.23
UPF1-210ENST00000600689 M0QY20 66 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 IGHV4-38-2P0DP08 117 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 C10orf99Q6UWK7 81 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 TRBV27A0A0K0K1C4 114 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 IGHV3-30-3P0DP02 117 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 ADAMTSL4-AS1Q5T5F5 129 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 CITED1Q99966 193 aa13.58□□□□□ -0.24
UPF1-210ENST00000600689 POLQO75417 2590 aa13.57□□□□□ -0.24
UPF1-210ENST00000600689 FAM19A4Q96LR4 140 aa13.57□□□□□ -0.24
UPF1-210ENST00000600689 FBN2P35556 2912 aa13.57□□□□□ -0.24
UPF1-210ENST00000600689 TIMM21Q9BVV7 248 aa13.57□□□□□ -0.24
UPF1-210ENST00000600689 DAZ1Q9NQZ3 744 aaKnown RBP13.57□□□□□ -0.24
UPF1-210ENST00000600689 IGLV4-3A0A075B6K6 122 aa13.56□□□□□ -0.24
UPF1-210ENST00000600689 KLLNB2CW77 178 aa13.56□□□□□ -0.24
UPF1-210ENST00000600689 MED14OSP0DP75 135 aa13.56□□□□□ -0.24
UPF1-210ENST00000600689 ZNF625Q96I27 306 aaPredicted RBP13.56□□□□□ -0.24
UPF1-210ENST00000600689 H3BMM0 161 aa13.55□□□□□ -0.24
UPF1-210ENST00000600689 UBE2WQ96B02 151 aa13.55□□□□□ -0.24
UPF1-210ENST00000600689 IGHV4-30-2A0A087WSY4 118 aa13.55□□□□□ -0.24
UPF1-210ENST00000600689 C20orf203Q8NBC4 194 aa13.55□□□□□ -0.24
UPF1-210ENST00000600689 IGHV3-16A0A0C4DH30 117 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms