RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	KRTAP17-1	Q9BYP8	105 aa		15.35	■□□□□ 0.05
LTBP4-227	ENST00000600026	MRPL18	Q9H0U6	180 aa	Known RBP	15.35	■□□□□ 0.05
LTBP4-227	ENST00000600026	DNAH1	Q9P2D7	4330 aa		15.35	■□□□□ 0.05
LTBP4-227	ENST00000600026	TRAV26-1	A0A087WT03	109 aa		15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026	TRAV26-2	A0A0B4J265	109 aa		15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026		M0QY20	66 aa		15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026	PPBP	P02775	128 aa		15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026	RAB5A	P20339	215 aa		15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026	RPS10	P46783	165 aa	Known RBP	15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026	FABP9	Q0Z7S8	132 aa		15.34	■□□□□ 0.05
LTBP4-227	ENST00000600026		A0A0J9YY99	117 aa		15.33	■□□□□ 0.04
LTBP4-227	ENST00000600026	TRBV10-1	A0A0K0K1A3	114 aa		15.33	■□□□□ 0.04
LTBP4-227	ENST00000600026	PPP1R17	O96001	155 aa		15.32	■□□□□ 0.04
LTBP4-227	ENST00000600026	ORMDL3	Q8N138	153 aa		15.32	■□□□□ 0.04
LTBP4-227	ENST00000600026	NIT2	Q9NQR4	276 aa		15.32	■□□□□ 0.04
LTBP4-227	ENST00000600026	TENM2	Q9NT68	2774 aa		15.32	■□□□□ 0.04
LTBP4-227	ENST00000600026		D6R8Y8	96 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	SMKR1	H3BMG3	65 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026		H3BNG1	76 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	NCR2	O95944	276 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	RPL36A	P83881	106 aa	Known RBP	15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	C15orf53	Q8NAA6	179 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	RPL36AL	Q969Q0	106 aa	Known RBP	15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	VSIG2	Q96IQ7	327 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026	DNAJC30	Q96LL9	226 aa		15.31	■□□□□ 0.04
LTBP4-227	ENST00000600026		P0DMU3	169 aa		15.3	■□□□□ 0.04
LTBP4-227	ENST00000600026	FAM231A	P0DMU4	169 aa		15.3	■□□□□ 0.04
LTBP4-227	ENST00000600026	FAM231C	P0DMU5	169 aa		15.3	■□□□□ 0.04
LTBP4-227	ENST00000600026	GYPE	P15421	78 aa		15.3	■□□□□ 0.04
LTBP4-227	ENST00000600026	OR10J3	Q5JRS4	329 aa		15.3	■□□□□ 0.04
LTBP4-227	ENST00000600026	TNFRSF18	Q9Y5U5	241 aa		15.3	■□□□□ 0.04
LTBP4-227	ENST00000600026	KIAA1644	Q3SXP7	199 aa		15.29	■□□□□ 0.04
LTBP4-227	ENST00000600026	NEXN-AS1	Q8NBZ9	246 aa		15.29	■□□□□ 0.04
LTBP4-227	ENST00000600026	PRELID3A	Q96N28	172 aa		15.29	■□□□□ 0.04
LTBP4-227	ENST00000600026	ICOS	Q9Y6W8	199 aa		15.29	■□□□□ 0.04
LTBP4-227	ENST00000600026	VPS13D	Q5THJ4	4388 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	GAGE12J	A6NER3	117 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	NUDT3	O95989	172 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	GAGE1	Q13065	139 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	GAGE4	Q13068	117 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	GAGE5	Q13069	117 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	GAGE13	Q4V321	117 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	ZNRF2	Q8NHG8	242 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	RPL39L	Q96EH5	51 aa	Known RBP	15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	LAMTOR2	Q9Y2Q5	125 aa		15.28	■□□□□ 0.04
LTBP4-227	ENST00000600026	TRBV7-3	A0A075B6L6	115 aa		15.27	■□□□□ 0.04
LTBP4-227	ENST00000600026	LOC100131303	A0A0U1RQF7	123 aa		15.27	■□□□□ 0.04
LTBP4-227	ENST00000600026	GAS8-AS1	O95177	125 aa		15.27	■□□□□ 0.04
LTBP4-227	ENST00000600026	MRPL23	Q16540	153 aa	Known RBP	15.27	■□□□□ 0.04
LTBP4-227	ENST00000600026	PHOX2A	O14813	284 aa		15.26	■□□□□ 0.03
LTBP4-227	ENST00000600026	TNFRSF6B	O95407	300 aa		15.26	■□□□□ 0.03
LTBP4-227	ENST00000600026	SRI	P30626	198 aa		15.26	■□□□□ 0.03
LTBP4-227	ENST00000600026	NRAC	Q8N912	160 aa		15.26	■□□□□ 0.03
LTBP4-227	ENST00000600026	ST20	Q9HBF5	79 aa		15.26	■□□□□ 0.03
LTBP4-227	ENST00000600026	TRBV6-5	A0A0K0K1A5	114 aa		15.25	■□□□□ 0.03
LTBP4-227	ENST00000600026	TRGC2	P03986	189 aa		15.25	■□□□□ 0.03
LTBP4-227	ENST00000600026	SH2D6	Q7Z4S9	175 aa		15.25	■□□□□ 0.03
LTBP4-227	ENST00000600026	LINC00476	Q8WZB0	136 aa		15.25	■□□□□ 0.03
LTBP4-227	ENST00000600026		Q9UF83	564 aa		15.25	■□□□□ 0.03
LTBP4-227	ENST00000600026	NPY	P01303	97 aa		15.24	■□□□□ 0.03
LTBP4-227	ENST00000600026	C20orf78	Q9BR46	151 aa		15.24	■□□□□ 0.03
LTBP4-227	ENST00000600026	LCE6A	A0A183	80 aa		15.23	■□□□□ 0.03
LTBP4-227	ENST00000600026	UBE2D3	P61077	147 aa		15.23	■□□□□ 0.03
LTBP4-227	ENST00000600026	UBE2D2	P62837	147 aa		15.23	■□□□□ 0.03
LTBP4-227	ENST00000600026	ALKBH7	Q9BT30	221 aa	Predicted RBP	15.23	■□□□□ 0.03
LTBP4-227	ENST00000600026		A0A096LPF7	62 aa		15.22	■□□□□ 0.03
LTBP4-227	ENST00000600026	SDHAF1	A6NFY7	115 aa		15.22	■□□□□ 0.03
LTBP4-227	ENST00000600026	SUMO2	P61956	95 aa	Known RBP	15.22	■□□□□ 0.03
LTBP4-227	ENST00000600026	LGALS9C	Q6DKI2	356 aa		15.22	■□□□□ 0.03
LTBP4-227	ENST00000600026	ATP6V0E2	Q8NHE4	81 aa		15.22	■□□□□ 0.03
LTBP4-227	ENST00000600026	MAP1LC3A	Q9H492	121 aa		15.22	■□□□□ 0.03
LTBP4-227	ENST00000600026	LINC00694	P0DN24	101 aa		15.21	■□□□□ 0.03
LTBP4-227	ENST00000600026	NEGR1	Q7Z3B1	354 aa		15.21	■□□□□ 0.03
LTBP4-227	ENST00000600026	LY6G6C	O95867	125 aa		15.2	■□□□□ 0.02
LTBP4-227	ENST00000600026	DAZ4	Q86SG3	579 aa	Known RBP	15.2	■□□□□ 0.02
LTBP4-227	ENST00000600026	TMEM70	Q9BUB7	260 aa		15.2	■□□□□ 0.02
LTBP4-227	ENST00000600026	DAZ3	Q9NR90	486 aa	Known RBP	15.2	■□□□□ 0.02
LTBP4-227	ENST00000600026	DNAH6	Q9C0G6	4158 aa		15.19	■□□□□ 0.02
LTBP4-227	ENST00000600026	HYDIN	Q4G0P3	5121 aa		15.19	■□□□□ 0.02
LTBP4-227	ENST00000600026	RPL32	P62910	135 aa	Known RBP	15.19	■□□□□ 0.02
LTBP4-227	ENST00000600026	VCY	O14598	125 aa		15.18	■□□□□ 0.02
LTBP4-227	ENST00000600026	PMCH	P20382	165 aa		15.18	■□□□□ 0.02
LTBP4-227	ENST00000600026	POLR2K	P53803	58 aa	Known RBP	15.18	■□□□□ 0.02
LTBP4-227	ENST00000600026	IGHV3-38	A0A0C4DH36	116 aa		15.17	■□□□□ 0.02
LTBP4-227	ENST00000600026	LOC389332	A0A1B0GUA5	103 aa		15.17	■□□□□ 0.02
LTBP4-227	ENST00000600026	PRSS47	A8MTI9	375 aa		15.17	■□□□□ 0.02
LTBP4-227	ENST00000600026		I3L3M4	83 aa		15.17	■□□□□ 0.02
LTBP4-227	ENST00000600026	UBE2DNL	Q8IWF7	75 aa		15.17	■□□□□ 0.02
LTBP4-227	ENST00000600026	SMIM2	Q9BVW6	85 aa		15.17	■□□□□ 0.02
LTBP4-227	ENST00000600026	TMEM97	Q5BJF2	176 aa		15.16	■□□□□ 0.02
LTBP4-227	ENST00000600026	GTSF1L	Q9H1H1	148 aa		15.16	■□□□□ 0.02
LTBP4-227	ENST00000600026	TRBV27	A0A0K0K1C4	114 aa		15.15	■□□□□ 0.02
LTBP4-227	ENST00000600026	C1orf196	B1AJZ1	125 aa		15.15	■□□□□ 0.02
LTBP4-227	ENST00000600026	COTL1	Q14019	142 aa		15.15	■□□□□ 0.02
LTBP4-227	ENST00000600026	KIR2DL4	Q99706	377 aa		15.15	■□□□□ 0.02
LTBP4-227	ENST00000600026	CCL18	P55774	89 aa		15.14	■□□□□ 0.01
LTBP4-227	ENST00000600026	ESRG	Q1W209	222 aa		15.14	■□□□□ 0.01
LTBP4-227	ENST00000600026		Q8N8P6	123 aa		15.14	■□□□□ 0.01
LTBP4-227	ENST00000600026	PRSS3P2	Q8NHM4	247 aa		15.14	■□□□□ 0.01

Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms