RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PMCHP20382 165 aa10.81□□□□□ -0.68
TRIM28-209ENST00000597423 FHL2Q14192 279 aa10.81□□□□□ -0.68
TRIM28-209ENST00000597423 NXT2Q9NPJ8 142 aaKnown RBP10.81□□□□□ -0.68
TRIM28-209ENST00000597423 CELA1Q9UNI1 258 aa10.81□□□□□ -0.68
TRIM28-209ENST00000597423 LOC389332A0A1B0GUA5 103 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 K7EQD1 137 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 VCYO14598 125 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 SUMO2P61956 95 aaKnown RBP10.8□□□□□ -0.68
TRIM28-209ENST00000597423 RHOHQ15669 191 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 C12orf74Q32Q52 190 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 Q6ZSN1 163 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 FA2HQ7L5A8 372 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 PRO0255Q9UI72 69 aa10.8□□□□□ -0.68
TRIM28-209ENST00000597423 DNHD1Q96M86 4753 aa10.79□□□□□ -0.68
TRIM28-209ENST00000597423 TCAPO15273 167 aa10.79□□□□□ -0.68
TRIM28-209ENST00000597423 LINC00614P0C842 121 aa10.79□□□□□ -0.68
TRIM28-209ENST00000597423 RPL32P62910 135 aaKnown RBP10.79□□□□□ -0.68
TRIM28-209ENST00000597423 RPL36AP83881 106 aaKnown RBP10.79□□□□□ -0.68
TRIM28-209ENST00000597423 COA6Q5JTJ3 125 aaKnown RBP10.79□□□□□ -0.68
TRIM28-209ENST00000597423 NIT1Q86X76 327 aa10.79□□□□□ -0.68
TRIM28-209ENST00000597423 SLC25A29Q8N8R3 303 aa10.79□□□□□ -0.68
TRIM28-209ENST00000597423 RPL36ALQ969Q0 106 aaKnown RBP10.79□□□□□ -0.68
TRIM28-209ENST00000597423 CHCHD1Q96BP2 118 aaKnown RBP10.79□□□□□ -0.68
TRIM28-209ENST00000597423 F5H768 121 aa10.78□□□□□ -0.68
TRIM28-209ENST00000597423 K7EMI3 77 aa10.78□□□□□ -0.68
TRIM28-209ENST00000597423 GAS8-AS1O95177 125 aa10.78□□□□□ -0.68
TRIM28-209ENST00000597423 Q8N8P6 123 aa10.78□□□□□ -0.68
TRIM28-209ENST00000597423 RPL39LQ96EH5 51 aaKnown RBP10.78□□□□□ -0.68
TRIM28-209ENST00000597423 TRBV7-3A0A075B6L6 115 aa10.77□□□□□ -0.69
TRIM28-209ENST00000597423 PAX4O43316 350 aa10.77□□□□□ -0.69
TRIM28-209ENST00000597423 HTN3P15516 51 aa10.77□□□□□ -0.69
TRIM28-209ENST00000597423 G0S2P27469 103 aa10.77□□□□□ -0.69
TRIM28-209ENST00000597423 IQCJQ1A5X6 159 aa10.77□□□□□ -0.69
TRIM28-209ENST00000597423 KIR2DL4Q99706 377 aa10.77□□□□□ -0.69
TRIM28-209ENST00000597423 SDHAF1A6NFY7 115 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 I3L3M4 83 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 IFI27P40305 119 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-209ENST00000597423 CRYBA4P53673 196 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 RNASEKQ6P5S7 137 aaKnown RBP10.76□□□□□ -0.69
TRIM28-209ENST00000597423 NEXN-AS1Q8NBZ9 246 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 TMEM70Q9BUB7 260 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 SMIM2Q9BVW6 85 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 AP5S1Q9NUS5 200 aa10.76□□□□□ -0.69
TRIM28-209ENST00000597423 HSBP1O75506 76 aa10.75□□□□□ -0.69
TRIM28-209ENST00000597423 POLR2KP53803 58 aaKnown RBP10.75□□□□□ -0.69
TRIM28-209ENST00000597423 DAZ4Q86SG3 579 aaKnown RBP10.75□□□□□ -0.69
TRIM28-209ENST00000597423 ZNRF2Q8NHG8 242 aa10.75□□□□□ -0.69
TRIM28-209ENST00000597423 DAZ3Q9NR90 486 aaKnown RBP10.75□□□□□ -0.69
TRIM28-209ENST00000597423 TRBV27A0A0K0K1C4 114 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 SERF1AO75920 110 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 P0DMU3 169 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 FAM231AP0DMU4 169 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 FAM231CP0DMU5 169 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 HOXA5P20719 270 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 S100A2P29034 98 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 NANOS2P60321 138 aaKnown RBP10.74□□□□□ -0.69
TRIM28-209ENST00000597423 SNRPEP62304 92 aaKnown RBP10.74□□□□□ -0.69
TRIM28-209ENST00000597423 SH2D6Q7Z4S9 175 aa10.74□□□□□ -0.69
TRIM28-209ENST00000597423 GAGE12JA6NER3 117 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 ESDP10768 282 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 FCER1GP30273 86 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 GAGE1Q13065 139 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 GAGE4Q13068 117 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 GAGE5Q13069 117 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 LAGE3Q14657 143 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 GAGE13Q4V321 117 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 ORMDL2Q53FV1 153 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 Q6ZTC4 211 aa10.73□□□□□ -0.69
TRIM28-209ENST00000597423 DEFB131BA0A096LNP1 70 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 TRAV10A0A0B4J240 114 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 LINC01546A6NGU7 62 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 C5orf52A6NGY3 159 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 H3BNG1 76 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 GYPEP15421 78 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 TMEM97Q5BJF2 176 aa10.72□□□□□ -0.69
TRIM28-209ENST00000597423 IGLV2-18A0A075B6J9 118 aa10.71□□□□□ -0.69
TRIM28-209ENST00000597423 TRAV26-1A0A087WT03 109 aa10.71□□□□□ -0.69
TRIM28-209ENST00000597423 LINC01549A6NIU2 74 aa10.71□□□□□ -0.69
TRIM28-209ENST00000597423 UBE2D3P61077 147 aa10.71□□□□□ -0.69
TRIM28-209ENST00000597423 UBE2D2P62837 147 aa10.71□□□□□ -0.69
TRIM28-209ENST00000597423 COTL1Q14019 142 aa10.71□□□□□ -0.69
TRIM28-209ENST00000597423 MRPL23Q16540 153 aaKnown RBP10.71□□□□□ -0.69
TRIM28-209ENST00000597423 A0A0J9YY99 117 aa10.7□□□□□ -0.7
TRIM28-209ENST00000597423 NUDT3O95989 172 aa10.7□□□□□ -0.7
TRIM28-209ENST00000597423 TMEM18Q96B42 140 aa10.7□□□□□ -0.7
TRIM28-209ENST00000597423 ATP6V0E2Q8NHE4 81 aa10.69□□□□□ -0.7
TRIM28-209ENST00000597423 VSIG2Q96IQ7 327 aa10.69□□□□□ -0.7
TRIM28-209ENST00000597423 PACRGQ96M98 296 aaPredicted RBP10.69□□□□□ -0.7
TRIM28-209ENST00000597423 Q9UF83 564 aa10.69□□□□□ -0.7
TRIM28-209ENST00000597423 ICOSQ9Y6W8 199 aa10.69□□□□□ -0.7
TRIM28-209ENST00000597423 AMTP48728 403 aa10.68□□□□□ -0.7
TRIM28-209ENST00000597423 NEGR1Q7Z3B1 354 aa10.68□□□□□ -0.7
TRIM28-209ENST00000597423 HIST3H2BBQ8N257 126 aa10.68□□□□□ -0.7
TRIM28-209ENST00000597423 PHLDA1Q8WV24 401 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-209ENST00000597423 URB1-AS1Q96HZ7 61 aa10.68□□□□□ -0.7
TRIM28-209ENST00000597423 GTSF1LQ9H1H1 148 aa10.68□□□□□ -0.7
TRIM28-209ENST00000597423 LOC100131303A0A0U1RQF7 123 aa10.67□□□□□ -0.7
TRIM28-209ENST00000597423 NUPR1O60356 82 aa10.67□□□□□ -0.7
TRIM28-209ENST00000597423 SMAGPQ0VAQ4 97 aa10.67□□□□□ -0.7
TRIM28-209ENST00000597423 NACAE9PAV3 2078 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms