RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 CRYBG3Q68DQ2 2970 aa12.22□□□□□ -0.45
LIG1-206ENST00000594067 TRBV20-1A0A075B6N2 111 aa12.22□□□□□ -0.45
LIG1-206ENST00000594067 SNRPD3P62318 126 aaKnown RBP12.22□□□□□ -0.45
LIG1-206ENST00000594067 C10orf126Q8N4M7 172 aa12.22□□□□□ -0.45
LIG1-206ENST00000594067 OPRPNQ99935 248 aaPredicted RBP12.22□□□□□ -0.45
LIG1-206ENST00000594067 XGP55808 180 aa12.22□□□□□ -0.45
LIG1-206ENST00000594067 ZNF876PQ49A33 203 aa12.22□□□□□ -0.45
LIG1-206ENST00000594067 Q6ZUT4 128 aa12.22□□□□□ -0.45
LIG1-206ENST00000594067 SYNJ2BPP57105 145 aa12.21□□□□□ -0.45
LIG1-206ENST00000594067 IGHV1OR15-1A0A075B7D0 117 aa12.21□□□□□ -0.46
LIG1-206ENST00000594067 TRBV6-5A0A0K0K1A5 114 aa12.21□□□□□ -0.46
LIG1-206ENST00000594067 K7EQG2 157 aa12.21□□□□□ -0.46
LIG1-206ENST00000594067 M0QY20 66 aa12.21□□□□□ -0.46
LIG1-206ENST00000594067 CLUHP3Q96NS8 147 aa12.2□□□□□ -0.46
LIG1-206ENST00000594067 GEMIN7Q9H840 131 aaKnown RBP12.2□□□□□ -0.46
LIG1-206ENST00000594067 ODF3Q96PU9 254 aa12.2□□□□□ -0.46
LIG1-206ENST00000594067 PRO1854Q9UHT4 67 aa12.2□□□□□ -0.46
LIG1-206ENST00000594067 ZNF580Q9UK33 172 aa12.2□□□□□ -0.46
LIG1-206ENST00000594067 J3QQQ9 107 aa12.19□□□□□ -0.46
LIG1-206ENST00000594067 A8MWV9 139 aa12.19□□□□□ -0.46
LIG1-206ENST00000594067 TGFAP01135 160 aa12.19□□□□□ -0.46
LIG1-206ENST00000594067 TRAV26-1A0A087WT03 109 aa12.18□□□□□ -0.46
LIG1-206ENST00000594067 MAPK1IP1LQ8NDC0 245 aa12.18□□□□□ -0.46
LIG1-206ENST00000594067 CSMD2Q7Z408 3487 aa12.18□□□□□ -0.46
LIG1-206ENST00000594067 PKD1L2Q7Z442 2459 aa12.18□□□□□ -0.46
LIG1-206ENST00000594067 SCGB1C2P0DMR2 95 aa12.17□□□□□ -0.46
LIG1-206ENST00000594067 P0DMU3 169 aa12.17□□□□□ -0.46
LIG1-206ENST00000594067 FAM231AP0DMU4 169 aa12.17□□□□□ -0.46
LIG1-206ENST00000594067 FAM231CP0DMU5 169 aa12.17□□□□□ -0.46
LIG1-206ENST00000594067 CFAP46Q8IYW2 2715 aa12.17□□□□□ -0.46
LIG1-206ENST00000594067 EIF4EBP3O60516 100 aaPredicted RBP12.17□□□□□ -0.46
LIG1-206ENST00000594067 TRPT1Q86TN4 253 aaKnown RBP12.17□□□□□ -0.46
LIG1-206ENST00000594067 SORL1Q92673 2214 aa12.17□□□□□ -0.46
LIG1-206ENST00000594067 LGALS3P17931 250 aaKnown RBP12.16□□□□□ -0.46
LIG1-206ENST00000594067 ANKRD29Q8N6D5 301 aa12.16□□□□□ -0.46
LIG1-206ENST00000594067 DOPEY2Q9Y3R5 2298 aa12.16□□□□□ -0.46
LIG1-206ENST00000594067 A4D1N5 150 aa12.16□□□□□ -0.46
LIG1-206ENST00000594067 VCX2Q9H322 139 aa12.16□□□□□ -0.46
LIG1-206ENST00000594067 HTN1P15515 57 aa12.15□□□□□ -0.46
LIG1-206ENST00000594067 NSUN5P1Q3KNT7 163 aa12.15□□□□□ -0.46
LIG1-206ENST00000594067 RAX2Q96IS3 184 aa12.15□□□□□ -0.46
LIG1-206ENST00000594067 GATA3P23771 443 aa12.15□□□□□ -0.46
LIG1-206ENST00000594067 RHOHQ15669 191 aa12.15□□□□□ -0.46
LIG1-206ENST00000594067 IGHV3-64A0A075B6Q5 118 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 FLNCQ14315 2725 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 IGHV3-73A0A0B4J1V6 119 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 TMEM223A0PJW6 202 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 IGHV3-33P01772 117 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 HOXD3P31249 432 aaPredicted RBP12.14□□□□□ -0.47
LIG1-206ENST00000594067 Q5PR19 223 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 LINC01356Q8N9X3 169 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 TMEM89A2RUT3 159 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 RBMY1A1P0DJD3 496 aaKnown RBP12.14□□□□□ -0.47
LIG1-206ENST00000594067 RBMY1CP0DJD4 496 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 RBMY1FQ15415 496 aaKnown RBP12.14□□□□□ -0.47
LIG1-206ENST00000594067 C20orf203Q8NBC4 194 aa12.14□□□□□ -0.47
LIG1-206ENST00000594067 KNCNA6PVL3 124 aa12.13□□□□□ -0.47
LIG1-206ENST00000594067 I3L3M4 83 aa12.13□□□□□ -0.47
LIG1-206ENST00000594067 LEPROTO15243 131 aa12.13□□□□□ -0.47
LIG1-206ENST00000594067 TMEM263Q8WUH6 116 aaKnown RBP12.13□□□□□ -0.47
LIG1-206ENST00000594067 UTP20O75691 2785 aaKnown RBP12.13□□□□□ -0.47
LIG1-206ENST00000594067 SLC25A20O43772 301 aa12.13□□□□□ -0.47
LIG1-206ENST00000594067 USP9XQ93008 2570 aaPredicted RBP12.12□□□□□ -0.47
LIG1-206ENST00000594067 DOPEY1Q5JWR5 2465 aa12.12□□□□□ -0.47
LIG1-206ENST00000594067 A0A0J9YXV3 536 aa12.12□□□□□ -0.47
LIG1-206ENST00000594067 PRM2P04554 102 aa12.12□□□□□ -0.47
LIG1-206ENST00000594067 PROK1P58294 105 aa12.12□□□□□ -0.47
LIG1-206ENST00000594067 TRGV11A0A075B6L2 103 aa12.11□□□□□ -0.47
LIG1-206ENST00000594067 C9JAW5 83 aa12.11□□□□□ -0.47
LIG1-206ENST00000594067 ZNF22P17026 224 aaPredicted RBP12.11□□□□□ -0.47
LIG1-206ENST00000594067 DSCR9P59020 149 aa12.11□□□□□ -0.47
LIG1-206ENST00000594067 MUSTN1Q8IVN3 82 aa12.11□□□□□ -0.47
LIG1-206ENST00000594067 IGLV4-3A0A075B6K6 122 aa12.11□□□□□ -0.47
LIG1-206ENST00000594067 TRAV2A0A0B4J234 112 aa12.11□□□□□ -0.47
LIG1-206ENST00000594067 C18orf65Q6ZTR6 163 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 ERG28Q9UKR5 140 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 A0A0B4J2C4 111 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 TMEM262E9PQX1 116 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 M0QXV9 152 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 RHODO00212 210 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 DEFB136Q30KP8 78 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 VPREB3Q9UKI3 123 aa12.1□□□□□ -0.47
LIG1-206ENST00000594067 ELANEP08246 267 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 ZNF702PQ9H963 129 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 USP9YO00507 2555 aaPredicted RBP12.09□□□□□ -0.47
LIG1-206ENST00000594067 CREBBPQ92793 2442 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 H7C2G1 150 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 SLURP1P55000 103 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 DEFB131AP59861 70 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 ZANQ9Y493 2812 aa12.09□□□□□ -0.47
LIG1-206ENST00000594067 A0A096LNT2 108 aa12.08□□□□□ -0.48
LIG1-206ENST00000594067 RNF183Q96D59 192 aa12.08□□□□□ -0.48
LIG1-206ENST00000594067 BEX4Q9NWD9 120 aaPredicted RBP12.08□□□□□ -0.48
LIG1-206ENST00000594067 UBE2E2Q96LR5 201 aa12.08□□□□□ -0.48
LIG1-206ENST00000594067 CEMP1Q6PRD7 247 aaPredicted RBP12.07□□□□□ -0.48
LIG1-206ENST00000594067 M0R2P5 195 aa12.06□□□□□ -0.48
LIG1-206ENST00000594067 CD28P10747 220 aa12.06□□□□□ -0.48
LIG1-206ENST00000594067 Q9UF83 564 aa12.06□□□□□ -0.48
LIG1-206ENST00000594067 RNASE13Q5GAN3 156 aaKnown RBP12.06□□□□□ -0.48
LIG1-206ENST00000594067 RNF152Q8N8N0 203 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms