RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 OR11H2Q8NH07 326 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 NDUFAF3Q9BU61 184 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 NOP10Q9NPE3 64 aaKnown RBP7.44□□□□□ -1.22
VPS4B-204ENST00000589604 SMIM9A6NGZ8 99 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 DEFB4AO15263 64 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 LGALS9BQ3B8N2 356 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 PDZD11Q5EBL8 140 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 SUMO4Q6EEV6 95 aa7.44□□□□□ -1.22
VPS4B-204ENST00000589604 IGLV2-18A0A075B6J9 118 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 A8MWV9 139 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 MGPP08493 103 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 Q6ZSN1 163 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 LINC00612Q8N6U2 182 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 Q8NAQ8 132 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 RPL39LQ96EH5 51 aaKnown RBP7.43□□□□□ -1.22
VPS4B-204ENST00000589604 EDA2RQ9HAV5 297 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 LAMTOR2Q9Y2Q5 125 aa7.43□□□□□ -1.22
VPS4B-204ENST00000589604 TRGV1A0A0A0MS02 117 aa7.42□□□□□ -1.22
VPS4B-204ENST00000589604 M0QY20 66 aa7.42□□□□□ -1.22
VPS4B-204ENST00000589604 SMIM17P0DL12 118 aa7.42□□□□□ -1.22
VPS4B-204ENST00000589604 IFI27P40305 119 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-204ENST00000589604 FAM74A4Q5TZK3 123 aa7.42□□□□□ -1.22
VPS4B-204ENST00000589604 HIST1H2BLQ99880 126 aa7.42□□□□□ -1.22
VPS4B-204ENST00000589604 IGHV4-28A0A0C4DH34 117 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 A0A0J9YWU9 116 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 LOC389332A0A1B0GUA5 103 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 LINC01546A6NGU7 62 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 LINC00614P0C842 121 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 Q9UF83 564 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 IGHV3-73A0A0B4J1V6 119 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 ZFP2Q6ZN57 461 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 ZNF479Q96JC4 524 aa7.41□□□□□ -1.22
VPS4B-204ENST00000589604 TRAV4A0A0B4J268 109 aa7.4□□□□□ -1.23
VPS4B-204ENST00000589604 TRBV6-5A0A0K0K1A5 114 aa7.4□□□□□ -1.23
VPS4B-204ENST00000589604 F5H697 171 aa7.4□□□□□ -1.23
VPS4B-204ENST00000589604 ZNF56Q15929 161 aa7.4□□□□□ -1.23
VPS4B-204ENST00000589604 RNASEKQ6P5S7 137 aaKnown RBP7.4□□□□□ -1.23
VPS4B-204ENST00000589604 FAM19A2Q8N3H0 131 aa7.4□□□□□ -1.23
VPS4B-204ENST00000589604 CHCHD1Q96BP2 118 aaKnown RBP7.4□□□□□ -1.23
VPS4B-204ENST00000589604 MAP1LC3AQ9H492 121 aa7.4□□□□□ -1.23
VPS4B-204ENST00000589604 A0A096LNJ9 63 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 GAGE12BA1L429 117 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 RHODO00212 210 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 GAGE7O76087 117 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 IGHV3-53P01767 116 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 GAGE12FP0CL80 117 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 GAGE12GP0CL81 117 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 GAGE12IP0CL82 117 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 P0DMU3 169 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 FAM231AP0DMU4 169 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 FAM231CP0DMU5 169 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 MIFP14174 115 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 FABP4P15090 132 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 POLR2KP53803 58 aaKnown RBP7.39□□□□□ -1.23
VPS4B-204ENST00000589604 EMP1P54849 157 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 Q8N8P6 123 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 OR4C5Q8NGB2 326 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 PRSS3P2Q8NHM4 247 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 PACRGQ96M98 296 aaPredicted RBP7.39□□□□□ -1.23
VPS4B-204ENST00000589604 C20orf78Q9BR46 151 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 CELA1Q9UNI1 258 aa7.39□□□□□ -1.23
VPS4B-204ENST00000589604 SUMO2P61956 95 aaKnown RBP7.38□□□□□ -1.23
VPS4B-204ENST00000589604 RPL32P62910 135 aaKnown RBP7.38□□□□□ -1.23
VPS4B-204ENST00000589604 PMCHL1Q16048 86 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 C18orf15Q96N68 181 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 SMIM2Q9BVW6 85 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 IGHV1-24A0A0C4DH33 117 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 LYRM9A8MSI8 78 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 PPP1R17O96001 155 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 S100A2P29034 98 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 FAM222AQ5U5X8 452 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 FA2HQ7L5A8 372 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 TMEM18Q96B42 140 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 TMEM70Q9BUB7 260 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 C11orf68Q9H3H3 251 aaKnown RBP7.38□□□□□ -1.23
VPS4B-204ENST00000589604 NXT2Q9NPJ8 142 aaKnown RBP7.38□□□□□ -1.23
VPS4B-204ENST00000589604 NIT2Q9NQR4 276 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 FAM30AQ9NZY2 134 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 DKK2Q9UBU2 259 aa7.38□□□□□ -1.23
VPS4B-204ENST00000589604 STARD9Q9P2P6 4700 aa7.37□□□□□ -1.23
VPS4B-204ENST00000589604 TENM2Q9NT68 2774 aa7.37□□□□□ -1.23
VPS4B-204ENST00000589604 PMCHP20382 165 aa7.37□□□□□ -1.23
VPS4B-204ENST00000589604 PCP4P48539 62 aa7.37□□□□□ -1.23
VPS4B-204ENST00000589604 AMTP48728 403 aa7.37□□□□□ -1.23
VPS4B-204ENST00000589604 OR10D4PQ8NGN7 298 aa7.37□□□□□ -1.23
VPS4B-204ENST00000589604 HSBP1O75506 76 aa7.36□□□□□ -1.23
VPS4B-204ENST00000589604 FHL2Q14192 279 aa7.36□□□□□ -1.23
VPS4B-204ENST00000589604 LINC00173Q6ZV60 143 aa7.36□□□□□ -1.23
VPS4B-204ENST00000589604 NEGR1Q7Z3B1 354 aa7.36□□□□□ -1.23
VPS4B-204ENST00000589604 NEXN-AS1Q8NBZ9 246 aa7.36□□□□□ -1.23
VPS4B-204ENST00000589604 ST20Q9HBF5 79 aa7.36□□□□□ -1.23
VPS4B-204ENST00000589604 TRGV2A0A075B6R0 118 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 TRBV27A0A0K0K1C4 114 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 SDHAF1A6NFY7 115 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 TCAPO15273 167 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 CIDEAO60543 219 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 DEFB130BP0DP73 79 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 DEFB130AP0DP74 79 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 NANOS2P60321 138 aaKnown RBP7.35□□□□□ -1.23
VPS4B-204ENST00000589604 MAJINQ3KP22 176 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 229.3 ms