RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 C5orf17Q8NAS9 161 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 OCC1Q8TAD7 63 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 KCNIP2Q9NS61 270 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 NAT8Q9UHE5 227 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 B4DEV8 164 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 K7EN84 100 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 PEX7O00628 323 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 HBE1P02100 147 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 SRP19P09132 144 aaKnown RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 DSCR10P59022 87 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 SNRPD3P62318 126 aaKnown RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TDRG1Q3Y452 100 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TMEM78Q5T7P6 136 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 FAM74A4Q5TZK3 123 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 MRPL54Q6P161 138 aaKnown RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 LINC00322Q6ZN03 302 aaPredicted RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 Q6ZVH6 145 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 STHQ8IWL8 128 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 Q8N2B8 174 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 Q8NBF4 154 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 BTF3L4Q96K17 158 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 NIPSNAP3BQ9BS92 247 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 AGPAT4-IT1Q9H0P7 198 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 SRD5A3Q9H8P0 318 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 ZNF331Q9NQX6 463 aaPredicted RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 LAMTOR2Q9Y2Q5 125 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TRAV8-2A0A0B4J237 113 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 INS-IGF2F8WCM5 200 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 H7C423 109 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TCRAP04437 139 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 IGLC2P0DOY2 106 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 ZNF80P51504 273 aaPredicted RBP2.37□□□□□ -2.03
ZNF540-207ENST00000589285 HSD52Q0P140 79 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TMEM183BQ1AE95 376 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 PRR9Q5T870 116 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 FA2HQ7L5A8 372 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 RCHY1Q96PM5 261 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 PYGO2Q9BRQ0 406 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 NDFIP1Q9BT67 221 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TMEM167BQ9NRX6 74 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 ERG28Q9UKR5 140 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 TP53TG3Q9ULZ0 132 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 EPDR1Q9UM22 224 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 ARL2-SNX15V9GYD0 113 aa2.37□□□□□ -2.03
ZNF540-207ENST00000589285 M0R381 172 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 GNRH2O43555 120 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 CDK2AP2O75956 126 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 SMIM17P0DL12 118 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 S100A4P26447 101 aaKnown RBP2.36□□□□□ -2.03
ZNF540-207ENST00000589285 LCE1EQ5T753 118 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 EBLN2Q6P2I7 272 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 NDUFA11Q86Y39 141 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 OR10J6PQ8NGY7 276 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 DCANP1Q8TF63 244 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 GPR82Q96P67 336 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 ANAPC13Q9BS18 74 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 V9GYY9 64 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 ANK2Q01484 3957 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 A0A096LPF7 62 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 IGHV3-16A0A0C4DH30 117 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 A0A1W2PRE2 83 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 J3QR89 54 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 NDUFA7O95182 113 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 CT45A10P0DMU9 189 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 DEFB130BP0DP73 79 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 DEFB130AP0DP74 79 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 HNRNPA3P51991 378 aaKnown RBP2.36□□□□□ -2.03
ZNF540-207ENST00000589285 FOXA3P55318 350 aaPredicted RBP2.36□□□□□ -2.03
ZNF540-207ENST00000589285 GTSCR1Q86UQ5 136 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 MBD3L1Q8WWY6 194 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 ZC2HC1AQ96GY0 325 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 VAMP8Q9BV40 100 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 MRPL32Q9BYC8 188 aaKnown RBP2.36□□□□□ -2.03
ZNF540-207ENST00000589285 C16orf95Q9H693 158 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 JPT2Q9H910 190 aa2.36□□□□□ -2.03
ZNF540-207ENST00000589285 H3BUA1 57 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 H3BVH4 76 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 HINT1P49773 126 aaPredicted RBP2.35□□□□□ -2.03
ZNF540-207ENST00000589285 TCTAP57738 103 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 KRTAP10-5P60370 271 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 ZNF506Q5JVG8 444 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 AMMECR1LQ6DCA0 310 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 Q6ZN92 141 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 OR8A1Q8NGG7 326 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 PGLYRP4Q96LB8 373 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 IMMP2LQ96T52 175 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 LINC01587Q99440 93 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 NAA38Q9BRA0 125 aaKnown RBP2.35□□□□□ -2.03
ZNF540-207ENST00000589285 IGLV7-46A0A075B6I9 117 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 OR4C46A6NHA9 309 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.35□□□□□ -2.03
ZNF540-207ENST00000589285 MRPS12O15235 138 aaKnown RBP2.35□□□□□ -2.03
ZNF540-207ENST00000589285 NTF3P20783 257 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 MYCNOSP40205 109 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 CTRLP40313 264 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 RPL23P62829 140 aaKnown RBP2.35□□□□□ -2.03
ZNF540-207ENST00000589285 IBA57Q5T440 356 aaKnown RBP2.35□□□□□ -2.03
ZNF540-207ENST00000589285 KIR2DL5BQ8NHK3 375 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 MYOZ3Q8TDC0 251 aa2.35□□□□□ -2.03
ZNF540-207ENST00000589285 UQCR10Q9UDW1 63 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms