RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 IL17DQ8TAD2 202 aa10.29□□□□□ -0.76
LIG3-205ENST00000585941 RNASE8Q8TDE3 154 aaKnown RBP10.29□□□□□ -0.76
LIG3-205ENST00000585941 CYSLTR1Q9Y271 337 aa10.29□□□□□ -0.76
LIG3-205ENST00000585941 IGHV3OR16-12A0A075B7B8 117 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 TRAV12-1A0A0B4J245 112 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 M0R143 59 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 RS1O15537 224 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 GIG44P09565 113 aaPredicted RBP10.28□□□□□ -0.76
LIG3-205ENST00000585941 RHOHQ15669 191 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 ERASQ7Z444 233 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 ZMAT4Q9H898 229 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 JMJD1CQ15652 2540 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 PRM2P04554 102 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 RPL35AP18077 110 aaKnown RBP10.28□□□□□ -0.76
LIG3-205ENST00000585941 AZU1P20160 251 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 HNRNPA3P51991 378 aaKnown RBP10.28□□□□□ -0.76
LIG3-205ENST00000585941 RIPPLY3P57055 190 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 C16orf74Q96GX8 76 aa10.28□□□□□ -0.76
LIG3-205ENST00000585941 NACAE9PAV3 2078 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 A0A087WX48 190 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 I3L3M4 83 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 DPM2O94777 84 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 DAZ2Q13117 558 aaKnown RBP10.27□□□□□ -0.77
LIG3-205ENST00000585941 SLC25A34Q6PIV7 304 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 DNAJC30Q96LL9 226 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 WFDC10AQ9H1F0 79 aa10.27□□□□□ -0.77
LIG3-205ENST00000585941 MRPL16Q9NX20 251 aaKnown RBP10.27□□□□□ -0.77
LIG3-205ENST00000585941 MRPS16Q9Y3D3 137 aaKnown RBP10.27□□□□□ -0.77
LIG3-205ENST00000585941 NIPBLQ6KC79 2804 aaeCLIP10.27□□□□□ -0.77
LIG3-205ENST00000585941 IGHV3-53P01767 116 aa10.26□□□□□ -0.77
LIG3-205ENST00000585941 CSNK1G2-AS1Q8NCQ2 148 aa10.26□□□□□ -0.77
LIG3-205ENST00000585941 DKK2Q9UBU2 259 aa10.26□□□□□ -0.77
LIG3-205ENST00000585941 IGKCP01834 107 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 PLNP26678 52 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 NEGR1Q7Z3B1 354 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 TMEM141Q96I45 108 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 TNFRSF18Q9Y5U5 241 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 TEP1Q99973 2627 aaKnown RBP10.25□□□□□ -0.77
LIG3-205ENST00000585941 CIDEAO60543 219 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 TIMM17AQ99595 171 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 C2orf88Q9BSF0 95 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 MAST4O15021 2626 aa10.25□□□□□ -0.77
LIG3-205ENST00000585941 TRGV1A0A0A0MS02 117 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 COX8AP10176 69 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 RRN3P1Q2M238 152 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 WFDC9Q8NEX5 89 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 OR4C5Q8NGB2 326 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 SNHG12Q9BXW3 62 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 TP53TG1Q9Y2A0 90 aa10.24□□□□□ -0.77
LIG3-205ENST00000585941 IGHV3-73A0A0B4J1V6 119 aa10.23□□□□□ -0.77
LIG3-205ENST00000585941 F8VRH5 84 aa10.23□□□□□ -0.77
LIG3-205ENST00000585941 NEXN-AS1Q8NBZ9 246 aa10.23□□□□□ -0.77
LIG3-205ENST00000585941 ATRQ13535 2644 aa10.23□□□□□ -0.77
LIG3-205ENST00000585941 TRAV4A0A0B4J268 109 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 IGIPA6NJ69 53 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 TSHBP01222 138 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 OVOL2Q9BRP0 275 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 MRPL35Q9NZE8 188 aaKnown RBP10.22□□□□□ -0.77
LIG3-205ENST00000585941 WIPF1O43516 503 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 ANKRD39Q53RE8 183 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 BAALCQ8WXS3 180 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 HHLA3Q9XRX5 114 aa10.22□□□□□ -0.77
LIG3-205ENST00000585941 CHTOPQ9Y3Y2 248 aaKnown RBP10.22□□□□□ -0.77
LIG3-205ENST00000585941 EREGO14944 169 aa10.21□□□□□ -0.78
LIG3-205ENST00000585941 DLEU1O43261 78 aa10.21□□□□□ -0.78
LIG3-205ENST00000585941 STPG4Q8N801 248 aa10.21□□□□□ -0.78
LIG3-205ENST00000585941 C20orf203Q8NBC4 194 aa10.21□□□□□ -0.78
LIG3-205ENST00000585941 NOTCH3Q9UM47 2321 aa10.21□□□□□ -0.78
LIG3-205ENST00000585941 TENM1Q9UKZ4 2725 aa10.2□□□□□ -0.78
LIG3-205ENST00000585941 TRBV10-1A0A0K0K1A3 114 aa10.2□□□□□ -0.78
LIG3-205ENST00000585941 PAPPA-AS1Q5QFB9 102 aa10.2□□□□□ -0.78
LIG3-205ENST00000585941 Q6ZSN1 163 aa10.2□□□□□ -0.78
LIG3-205ENST00000585941 Q6ZTI0 123 aa10.2□□□□□ -0.78
LIG3-205ENST00000585941 NOP10Q9NPE3 64 aaKnown RBP10.2□□□□□ -0.78
LIG3-205ENST00000585941 PLAC8L1A1L4L8 177 aa10.19□□□□□ -0.78
LIG3-205ENST00000585941 SMIM9A6NGZ8 99 aa10.19□□□□□ -0.78
LIG3-205ENST00000585941 NPSP0C0P6 89 aa10.19□□□□□ -0.78
LIG3-205ENST00000585941 PMVKQ15126 192 aa10.19□□□□□ -0.78
LIG3-205ENST00000585941 KIR2DL5BQ8NHK3 375 aa10.19□□□□□ -0.78
LIG3-205ENST00000585941 PRSS29PA6NIE9 313 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 P0DMU3 169 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 FAM231AP0DMU4 169 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 FAM231CP0DMU5 169 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 RPL39P62891 51 aaKnown RBP10.18□□□□□ -0.78
LIG3-205ENST00000585941 SIVA1O15304 175 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 APOC4P55056 127 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 ZC2HC1BQ5TFG8 222 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 BOD1L2Q8IYS8 172 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 SPATA3Q8NHX4 192 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 PYGO1Q9Y3Y4 419 aa10.18□□□□□ -0.78
LIG3-205ENST00000585941 TRGV2A0A075B6R0 118 aa10.17□□□□□ -0.78
LIG3-205ENST00000585941 ZNF479Q96JC4 524 aa10.17□□□□□ -0.78
LIG3-205ENST00000585941 VWFP04275 2813 aa10.17□□□□□ -0.78
LIG3-205ENST00000585941 K7EQD1 137 aa10.16□□□□□ -0.78
LIG3-205ENST00000585941 FGF6P10767 208 aa10.16□□□□□ -0.78
LIG3-205ENST00000585941 NMUP48645 174 aa10.16□□□□□ -0.78
LIG3-205ENST00000585941 CRYBA4P53673 196 aa10.16□□□□□ -0.78
LIG3-205ENST00000585941 RPL36AP83881 106 aaKnown RBP10.16□□□□□ -0.78
LIG3-205ENST00000585941 COTL1Q14019 142 aa10.16□□□□□ -0.78
LIG3-205ENST00000585941 RPL36ALQ969Q0 106 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms