RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 Q8TAT8 98 aa12.01□□□□□ -0.49
TOP3A-220ENST00000585031 PSCAO43653 123 aa12□□□□□ -0.49
TOP3A-220ENST00000585031 TRGC2P03986 189 aa12□□□□□ -0.49
TOP3A-220ENST00000585031 RPS20P60866 119 aaKnown RBP12□□□□□ -0.49
TOP3A-220ENST00000585031 RASL11AQ6T310 242 aa12□□□□□ -0.49
TOP3A-220ENST00000585031 AGPAT4-IT1Q9H0P7 198 aa12□□□□□ -0.49
TOP3A-220ENST00000585031 C7orf71A4D174 169 aa11.99□□□□□ -0.49
TOP3A-220ENST00000585031 SH2D1AO60880 128 aa11.99□□□□□ -0.49
TOP3A-220ENST00000585031 MT-ND6P03923 174 aa11.99□□□□□ -0.49
TOP3A-220ENST00000585031 Q6AWC8 147 aa11.99□□□□□ -0.49
TOP3A-220ENST00000585031 ATP5L2Q7Z4Y8 100 aa11.99□□□□□ -0.49
TOP3A-220ENST00000585031 FAM19A4Q96LR4 140 aa11.99□□□□□ -0.49
TOP3A-220ENST00000585031 TRBV7-9A0A0J9YWB2 115 aa11.98□□□□□ -0.49
TOP3A-220ENST00000585031 FABP5P3A8MUU1 101 aa11.98□□□□□ -0.49
TOP3A-220ENST00000585031 KLLNB2CW77 178 aa11.98□□□□□ -0.49
TOP3A-220ENST00000585031 PRR9Q5T870 116 aa11.98□□□□□ -0.49
TOP3A-220ENST00000585031 TRAPPC1Q9Y5R8 145 aa11.98□□□□□ -0.49
TOP3A-220ENST00000585031 HIGD1CA8MV81 97 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 GYPEP15421 78 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 SRIP30626 198 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 RNASE4P34096 147 aaKnown RBP11.97□□□□□ -0.49
TOP3A-220ENST00000585031 SLAQ13239 276 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 LINC01620Q4KN68 170 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 SCXQ7RTU7 201 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 ZNF479Q96JC4 524 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 GNB1LQ9BYB4 327 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 Q9HAA7 133 aa11.97□□□□□ -0.49
TOP3A-220ENST00000585031 IBA57-AS1B1ANH7 110 aa11.96□□□□□ -0.49
TOP3A-220ENST00000585031 CRIP1P50238 77 aa11.96□□□□□ -0.49
TOP3A-220ENST00000585031 ZNF415Q09FC8 603 aa11.96□□□□□ -0.49
TOP3A-220ENST00000585031 C10orf126Q8N4M7 172 aa11.96□□□□□ -0.49
TOP3A-220ENST00000585031 NUP35Q8NFH5 326 aa11.96□□□□□ -0.49
TOP3A-220ENST00000585031 BORCS7Q96B45 105 aa11.96□□□□□ -0.49
TOP3A-220ENST00000585031 LOC100131303A0A0U1RQF7 123 aa11.95□□□□□ -0.5
TOP3A-220ENST00000585031 LOC105371267A0A1B0GV96 52 aa11.95□□□□□ -0.5
TOP3A-220ENST00000585031 HLA-DQA1P01909 254 aa11.95□□□□□ -0.5
TOP3A-220ENST00000585031 FABP9Q0Z7S8 132 aa11.95□□□□□ -0.5
TOP3A-220ENST00000585031 MRPL54Q6P161 138 aaKnown RBP11.95□□□□□ -0.5
TOP3A-220ENST00000585031 S100A8P05109 93 aa11.94□□□□□ -0.5
TOP3A-220ENST00000585031 TRGC1P0CF51 173 aa11.94□□□□□ -0.5
TOP3A-220ENST00000585031 RAB4BP61018 213 aa11.94□□□□□ -0.5
TOP3A-220ENST00000585031 TRGV4A0A0C4DH28 118 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 IGHV3-38A0A0C4DH36 116 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 A0A1B0GW15 77 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BKO60814 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 ORM1P02763 201 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BJP06899 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BOP23527 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BBP33778 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 FOXA3P55318 350 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BDP58876 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BCP62807 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HBBP68871 147 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 RIGQ13278 110 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST2H2BEQ16778 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BHQ93079 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 PGLYRP4Q96LB8 373 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BNQ99877 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 HIST1H2BMQ99879 126 aa11.93□□□□□ -0.5
TOP3A-220ENST00000585031 MRPL18Q9H0U6 180 aaKnown RBP11.93□□□□□ -0.5
TOP3A-220ENST00000585031 PHOX2AO14813 284 aa11.92□□□□□ -0.5
TOP3A-220ENST00000585031 ZNF80P51504 273 aaPredicted RBP11.92□□□□□ -0.5
TOP3A-220ENST00000585031 HNRNPA3P51991 378 aaKnown RBP11.92□□□□□ -0.5
TOP3A-220ENST00000585031 LINC01559Q495D7 138 aa11.92□□□□□ -0.5
TOP3A-220ENST00000585031 LINC01556Q5JQF7 62 aa11.92□□□□□ -0.5
TOP3A-220ENST00000585031 TMEM136Q6ZRR5 245 aa11.92□□□□□ -0.5
TOP3A-220ENST00000585031 ZFAND2AQ8N6M9 145 aa11.92□□□□□ -0.5
TOP3A-220ENST00000585031 GTSF1Q8WW33 167 aa11.92□□□□□ -0.5
TOP3A-220ENST00000585031 IGHV1OR15-1A0A075B7D0 117 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 TRAV21A0A0B4J279 112 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 A0A1B0GUT8 65 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 LECT2O14960 151 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 GZMBP10144 247 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 CRISP2P16562 243 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 NDUFA6P56556 154 aa11.91□□□□□ -0.5
TOP3A-220ENST00000585031 A0A1B0GXF2 115 aa11.9□□□□□ -0.5
TOP3A-220ENST00000585031 GPX1P07203 203 aa11.9□□□□□ -0.5
TOP3A-220ENST00000585031 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-220ENST00000585031 TMSB15BA0A087X1C1 80 aa11.89□□□□□ -0.51
TOP3A-220ENST00000585031 C5orf52A6NGY3 159 aa11.89□□□□□ -0.51
TOP3A-220ENST00000585031 APCSP02743 223 aa11.89□□□□□ -0.51
TOP3A-220ENST00000585031 MT1HL1P0DM35 61 aa11.89□□□□□ -0.51
TOP3A-220ENST00000585031 SNRPEP62304 92 aaKnown RBP11.89□□□□□ -0.51
TOP3A-220ENST00000585031 FER1L6-AS1Q8NA97 138 aa11.89□□□□□ -0.51
TOP3A-220ENST00000585031 IGHV3-30P01768 117 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 IGHV3-33P01772 117 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 IGHV3-30-3P0DP02 117 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 IGHV3-30-5P0DP03 117 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 CAMPP49913 170 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 Q8N3U1 123 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 CIRBP-AS1Q8TBR5 109 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 TPPP3Q9BW30 176 aa11.88□□□□□ -0.51
TOP3A-220ENST00000585031 F2Z2F3 143 aa11.87□□□□□ -0.51
TOP3A-220ENST00000585031 CTRLP40313 264 aa11.87□□□□□ -0.51
TOP3A-220ENST00000585031 CHAC1Q9BUX1 264 aa11.87□□□□□ -0.51
TOP3A-220ENST00000585031 TIRAPP58753 221 aa11.86□□□□□ -0.51
TOP3A-220ENST00000585031 LYZL1Q6UWQ5 148 aa11.86□□□□□ -0.51
TOP3A-220ENST00000585031 RASL10AQ92737 203 aa11.86□□□□□ -0.51
TOP3A-220ENST00000585031 ARMS2P0C7Q2 107 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms