RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 TNFRSF18Q9Y5U5 241 aa12.8□□□□□ -0.36
RFFL-211ENST00000584541 LOC100131303A0A0U1RQF7 123 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 NUDT3O95989 172 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 P0DMU3 169 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 FAM231AP0DMU4 169 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 FAM231CP0DMU5 169 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 SRIP30626 198 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 TCTAP57738 103 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 OR10J3Q5JRS4 329 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 ORMDL3Q8N138 153 aa12.79□□□□□ -0.36
RFFL-211ENST00000584541 TRBV7-3A0A075B6L6 115 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 GAGE12JA6NER3 117 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 COLCA2A8K830 154 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 D6R8Y8 96 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 C3orf84H3BNL1 204 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 NCR2O95944 276 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 FABP9Q0Z7S8 132 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 GAGE1Q13065 139 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 GAGE4Q13068 117 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 GAGE5Q13069 117 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 GAGE13Q4V321 117 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 SH2D6Q7Z4S9 175 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.78□□□□□ -0.36
RFFL-211ENST00000584541 NEXN-AS1Q8NBZ9 246 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 ZNRF2Q8NHG8 242 aa12.78□□□□□ -0.36
RFFL-211ENST00000584541 SMKR1H3BMG3 65 aa12.77□□□□□ -0.37
RFFL-211ENST00000584541 RPS10P46783 165 aaKnown RBP12.77□□□□□ -0.37
RFFL-211ENST00000584541 RPL39LQ96EH5 51 aaKnown RBP12.77□□□□□ -0.37
RFFL-211ENST00000584541 RAB5AP20339 215 aa12.76□□□□□ -0.37
RFFL-211ENST00000584541 A0A096LPF7 62 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 KIAA1644Q3SXP7 199 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 NEGR1Q7Z3B1 354 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 PRELID3AQ96N28 172 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 ST20Q9HBF5 79 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 Q9UF83 564 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 LAMTOR2Q9Y2Q5 125 aa12.75□□□□□ -0.37
RFFL-211ENST00000584541 TRBV6-5A0A0K0K1A5 114 aa12.74□□□□□ -0.37
RFFL-211ENST00000584541 PHOX2AO14813 284 aa12.74□□□□□ -0.37
RFFL-211ENST00000584541 GAS8-AS1O95177 125 aa12.74□□□□□ -0.37
RFFL-211ENST00000584541 ATP6V0E2Q8NHE4 81 aa12.74□□□□□ -0.37
RFFL-211ENST00000584541 TNFRSF6BO95407 300 aa12.73□□□□□ -0.37
RFFL-211ENST00000584541 LINC00694P0DN24 101 aa12.73□□□□□ -0.37
RFFL-211ENST00000584541 UBE2D3P61077 147 aa12.73□□□□□ -0.37
RFFL-211ENST00000584541 UBE2D2P62837 147 aa12.73□□□□□ -0.37
RFFL-211ENST00000584541 NRACQ8N912 160 aa12.73□□□□□ -0.37
RFFL-211ENST00000584541 APLNQ9ULZ1 77 aa12.73□□□□□ -0.37
RFFL-211ENST00000584541 SUMO2P61956 95 aaKnown RBP12.72□□□□□ -0.37
RFFL-211ENST00000584541 CASC10Q5T4H9 136 aa12.72□□□□□ -0.37
RFFL-211ENST00000584541 DAZ4Q86SG3 579 aaKnown RBP12.72□□□□□ -0.37
RFFL-211ENST00000584541 C20orf78Q9BR46 151 aa12.72□□□□□ -0.37
RFFL-211ENST00000584541 DAZ3Q9NR90 486 aaKnown RBP12.72□□□□□ -0.37
RFFL-211ENST00000584541 SDHAF1A6NFY7 115 aa12.71□□□□□ -0.37
RFFL-211ENST00000584541 NPYP01303 97 aa12.71□□□□□ -0.37
RFFL-211ENST00000584541 DNAH7Q8WXX0 4024 aa12.71□□□□□ -0.37
RFFL-211ENST00000584541 GTSF1LQ9H1H1 148 aa12.7□□□□□ -0.38
RFFL-211ENST00000584541 MAP1LC3AQ9H492 121 aa12.7□□□□□ -0.38
RFFL-211ENST00000584541 TRGC2P03986 189 aa12.69□□□□□ -0.38
RFFL-211ENST00000584541 PMCHP20382 165 aa12.69□□□□□ -0.38
RFFL-211ENST00000584541 TMEM97Q5BJF2 176 aa12.69□□□□□ -0.38
RFFL-211ENST00000584541 ALKBH7Q9BT30 221 aaPredicted RBP12.69□□□□□ -0.38
RFFL-211ENST00000584541 TMEM70Q9BUB7 260 aa12.69□□□□□ -0.38
RFFL-211ENST00000584541 IGHV3-38A0A0C4DH36 116 aa12.68□□□□□ -0.38
RFFL-211ENST00000584541 I3L3M4 83 aa12.68□□□□□ -0.38
RFFL-211ENST00000584541 VCYO14598 125 aa12.68□□□□□ -0.38
RFFL-211ENST00000584541 CCL18P55774 89 aa12.68□□□□□ -0.38
RFFL-211ENST00000584541 POLR2KP53803 58 aaKnown RBP12.67□□□□□ -0.38
RFFL-211ENST00000584541 RPL32P62910 135 aaKnown RBP12.67□□□□□ -0.38
RFFL-211ENST00000584541 COTL1Q14019 142 aa12.67□□□□□ -0.38
RFFL-211ENST00000584541 LYPD5Q6UWN5 251 aa12.67□□□□□ -0.38
RFFL-211ENST00000584541 SMIM2Q9BVW6 85 aa12.67□□□□□ -0.38
RFFL-211ENST00000584541 TRBV27A0A0K0K1C4 114 aa12.66□□□□□ -0.38
RFFL-211ENST00000584541 LOC389332A0A1B0GUA5 103 aa12.66□□□□□ -0.38
RFFL-211ENST00000584541 TIRAPP58753 221 aa12.66□□□□□ -0.38
RFFL-211ENST00000584541 KIR2DL4Q99706 377 aa12.66□□□□□ -0.38
RFFL-211ENST00000584541 PRSS47A8MTI9 375 aa12.65□□□□□ -0.38
RFFL-211ENST00000584541 ESRGQ1W209 222 aa12.65□□□□□ -0.38
RFFL-211ENST00000584541 UBE2DNLQ8IWF7 75 aa12.65□□□□□ -0.38
RFFL-211ENST00000584541 TCAPO15273 167 aa12.64□□□□□ -0.39
RFFL-211ENST00000584541 FCER1GP30273 86 aa12.64□□□□□ -0.39
RFFL-211ENST00000584541 NXT2Q9NPJ8 142 aaKnown RBP12.64□□□□□ -0.39
RFFL-211ENST00000584541 LELP1Q5T871 98 aa12.63□□□□□ -0.39
RFFL-211ENST00000584541 PRSS3P2Q8NHM4 247 aa12.63□□□□□ -0.39
RFFL-211ENST00000584541 TRBV25-1A0A075B6N4 114 aa12.62□□□□□ -0.39
RFFL-211ENST00000584541 TRBV6-8A0A0A6YYG3 113 aa12.62□□□□□ -0.39
RFFL-211ENST00000584541 TRAV8-6A0A0B4J262 113 aa12.62□□□□□ -0.39
RFFL-211ENST00000584541 IGHV1-24A0A0C4DH33 117 aa12.62□□□□□ -0.39
RFFL-211ENST00000584541 Q8N8P6 123 aa12.62□□□□□ -0.39
RFFL-211ENST00000584541 AMTP48728 403 aa12.61□□□□□ -0.39
RFFL-211ENST00000584541 C18orf32Q8TCD1 76 aa12.61□□□□□ -0.39
RFFL-211ENST00000584541 DEFB104AQ8WTQ1 72 aa12.61□□□□□ -0.39
RFFL-211ENST00000584541 MRPS16Q9Y3D3 137 aaKnown RBP12.61□□□□□ -0.39
RFFL-211ENST00000584541 LINC00588Q9Y4M8 146 aa12.61□□□□□ -0.39
RFFL-211ENST00000584541 CSMD3Q7Z407 3707 aa12.61□□□□□ -0.39
RFFL-211ENST00000584541 TSHBP01222 138 aa12.6□□□□□ -0.39
RFFL-211ENST00000584541 IFI27P40305 119 aaPredicted RBP12.6□□□□□ -0.39
RFFL-211ENST00000584541 NTM-AS1Q6ZSK4 140 aa12.6□□□□□ -0.39
RFFL-211ENST00000584541 DYNC2H1Q8NCM8 4307 aaKnown RBP12.6□□□□□ -0.39
RFFL-211ENST00000584541 IGLV2-18A0A075B6J9 118 aa12.59□□□□□ -0.39
RFFL-211ENST00000584541 C1orf196B1AJZ1 125 aa12.59□□□□□ -0.39
RFFL-211ENST00000584541 K7EMI3 77 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms