RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 A0A0J9YXV3 536 aa11.02□□□□□ -0.65
CCDC40-211ENST00000574099 MBP02144 154 aa11.02□□□□□ -0.65
CCDC40-211ENST00000574099 OR10AG1Q8NH19 301 aa11.02□□□□□ -0.65
CCDC40-211ENST00000574099 MUC21A0A0G2JKD1 596 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 TRBV6-1A0A0K0K1D8 114 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 MUC21A0A140T8X8 626 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 F5H697 171 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 ZNF674Q2M3X9 581 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 TMEM97Q5BJF2 176 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 ZFP30Q9Y2G7 519 aa11.01□□□□□ -0.65
CCDC40-211ENST00000574099 UBE2G1P62253 170 aa11□□□□□ -0.65
CCDC40-211ENST00000574099 COX8CQ7Z4L0 72 aa11□□□□□ -0.65
CCDC40-211ENST00000574099 HIST1H2BAQ96A08 127 aa11□□□□□ -0.65
CCDC40-211ENST00000574099 IGKV2-24A0A0C4DH68 120 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 FAM74A7A6NL05 159 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 SSTP61278 116 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 SERF2P84101 59 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 COX6A2Q02221 97 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 ZNF726P1Q15940 193 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 MAJINQ3KP22 176 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 LYPD6BQ8NI32 183 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 VAX2Q9UIW0 290 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 TNFSF18Q9UNG2 199 aa10.99□□□□□ -0.65
CCDC40-211ENST00000574099 C20orf203Q8NBC4 194 aa10.98□□□□□ -0.65
CCDC40-211ENST00000574099 FMC1Q96HJ9 113 aa10.98□□□□□ -0.65
CCDC40-211ENST00000574099 ZNF471Q9BX82 626 aaPredicted RBP10.98□□□□□ -0.65
CCDC40-211ENST00000574099 GFRA4Q9GZZ7 299 aa10.98□□□□□ -0.65
CCDC40-211ENST00000574099 IGHV1-24A0A0C4DH33 117 aa10.97□□□□□ -0.65
CCDC40-211ENST00000574099 UPK1BO75841 260 aa10.97□□□□□ -0.65
CCDC40-211ENST00000574099 KRTAP10-8P60410 259 aa10.97□□□□□ -0.65
CCDC40-211ENST00000574099 IQCJQ1A5X6 159 aa10.97□□□□□ -0.65
CCDC40-211ENST00000574099 IGLV4-60A0A075B6I1 120 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 TRAV8-4A0A0B4J246 113 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 A6NHS1 94 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 P01737 135 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 IFITM3Q01628 133 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 SPANXN1Q5VSR9 72 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 STPG4Q8N801 248 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 PRSS3P2Q8NHM4 247 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 MARVELD1Q9BSK0 173 aa10.96□□□□□ -0.65
CCDC40-211ENST00000574099 CTXND1A0A1B0GTU2 59 aa10.95□□□□□ -0.66
CCDC40-211ENST00000574099 LTAP01374 205 aa10.95□□□□□ -0.66
CCDC40-211ENST00000574099 HIGD2BQ4VC39 106 aa10.95□□□□□ -0.66
CCDC40-211ENST00000574099 REG3GQ6UW15 175 aa10.95□□□□□ -0.66
CCDC40-211ENST00000574099 C15orf56Q8N910 161 aa10.95□□□□□ -0.66
CCDC40-211ENST00000574099 LPAP08519 4548 aa10.94□□□□□ -0.66
CCDC40-211ENST00000574099 NDUFS6O75380 124 aaKnown RBP10.94□□□□□ -0.66
CCDC40-211ENST00000574099 S100ZQ8WXG8 99 aa10.94□□□□□ -0.66
CCDC40-211ENST00000574099 NKX6-2Q9C056 277 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-211ENST00000574099 SMIM17P0DL12 118 aa10.93□□□□□ -0.66
CCDC40-211ENST00000574099 AKR1C3P42330 323 aa10.93□□□□□ -0.66
CCDC40-211ENST00000574099 SPINK6Q6UWN8 80 aa10.93□□□□□ -0.66
CCDC40-211ENST00000574099 AQP10Q96PS8 301 aa10.93□□□□□ -0.66
CCDC40-211ENST00000574099 SNAI2O43623 268 aa10.92□□□□□ -0.66
CCDC40-211ENST00000574099 MGPP08493 103 aa10.92□□□□□ -0.66
CCDC40-211ENST00000574099 RPS10P46783 165 aaKnown RBP10.92□□□□□ -0.66
CCDC40-211ENST00000574099 TMEM243Q9BU79 118 aa10.92□□□□□ -0.66
CCDC40-211ENST00000574099 GAGE12HA6NDE8 117 aa10.91□□□□□ -0.66
CCDC40-211ENST00000574099 GZMBP10144 247 aa10.91□□□□□ -0.66
CCDC40-211ENST00000574099 SULT1A2P50226 295 aa10.91□□□□□ -0.66
CCDC40-211ENST00000574099 CST9LP1Q5W188 147 aa10.91□□□□□ -0.66
CCDC40-211ENST00000574099 RPL7L1Q6DKI1 246 aaKnown RBP10.91□□□□□ -0.66
CCDC40-211ENST00000574099 INO80EQ8NBZ0 244 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-211ENST00000574099 AP1S3Q96PC3 154 aa10.91□□□□□ -0.66
CCDC40-211ENST00000574099 A0A096LNI7 61 aa10.9□□□□□ -0.66
CCDC40-211ENST00000574099 IGKV3OR2-268A0A0C4DH90 116 aa10.9□□□□□ -0.66
CCDC40-211ENST00000574099 CXCL1P09341 107 aa10.9□□□□□ -0.66
CCDC40-211ENST00000574099 STOML3Q8TAV4 291 aa10.9□□□□□ -0.66
CCDC40-211ENST00000574099 SSBP4Q9BWG4 385 aaPredicted RBP10.9□□□□□ -0.66
CCDC40-211ENST00000574099 A0A1B0GUV1 79 aa10.89□□□□□ -0.67
CCDC40-211ENST00000574099 OR5AL1P0C617 328 aa10.89□□□□□ -0.67
CCDC40-211ENST00000574099 NKX2-5P52952 324 aaPredicted RBP10.89□□□□□ -0.67
CCDC40-211ENST00000574099 CFAP161Q6P656 301 aa10.89□□□□□ -0.67
CCDC40-211ENST00000574099 MAP1LC3B2A6NCE7 125 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 M0QY20 66 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 UBE2L6O14933 153 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 AKR1C8PQ5T2L2 129 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 SUMO4Q6EEV6 95 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 MAP1LC3BQ9GZQ8 125 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 NDUFA13Q9P0J0 144 aa10.88□□□□□ -0.67
CCDC40-211ENST00000574099 LINC00299Q6ZSB3 139 aa10.87□□□□□ -0.67
CCDC40-211ENST00000574099 BORCS7-ASMTA0A0B4J1R7 106 aa10.86□□□□□ -0.67
CCDC40-211ENST00000574099 TCEAL7Q9BRU2 100 aa10.86□□□□□ -0.67
CCDC40-211ENST00000574099 H7C1H1 209 aa10.85□□□□□ -0.67
CCDC40-211ENST00000574099 SRSF9Q13242 221 aaKnown RBP eCLIP10.85□□□□□ -0.67
CCDC40-211ENST00000574099 Q5BKY6 102 aa10.85□□□□□ -0.67
CCDC40-211ENST00000574099 TPPP3Q9BW30 176 aa10.85□□□□□ -0.67
CCDC40-211ENST00000574099 ALG5Q9Y673 324 aa10.85□□□□□ -0.67
CCDC40-211ENST00000574099 SCO2A0A1W2PP80 73 aa10.84□□□□□ -0.67
CCDC40-211ENST00000574099 AMTP48728 403 aa10.84□□□□□ -0.67
CCDC40-211ENST00000574099 FHITP49789 147 aa10.84□□□□□ -0.67
CCDC40-211ENST00000574099 Q6ZRP5 223 aa10.84□□□□□ -0.67
CCDC40-211ENST00000574099 BAGE2Q86Y30 109 aa10.84□□□□□ -0.67
CCDC40-211ENST00000574099 PAGE4O60829 102 aa10.83□□□□□ -0.68
CCDC40-211ENST00000574099 GVQW2A0A096LPI5 108 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-211ENST00000574099 DEFA1P59665 94 aa10.82□□□□□ -0.68
CCDC40-211ENST00000574099 RASL11AQ6T310 242 aa10.82□□□□□ -0.68
CCDC40-211ENST00000574099 CHCHD10Q8WYQ3 142 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-211ENST00000574099 MLST8Q9BVC4 326 aa10.82□□□□□ -0.68
CCDC40-211ENST00000574099 FXYD6-FXYD2A0A087WZ82 144 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms