RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BTF3P20290 206 aaKnown RBP5.79□□□□□ -1.48
VPS39-213ENST00000570062 FCER1GP30273 86 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 IFI27P40305 119 aaPredicted RBP5.79□□□□□ -1.48
VPS39-213ENST00000570062 LAGE3Q14657 143 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 RBMY1FQ15415 496 aaKnown RBP5.79□□□□□ -1.48
VPS39-213ENST00000570062 PET117Q6UWS5 81 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 SPATA12Q7Z6I5 190 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 NRACQ8N912 160 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 C11orf72Q8NBR9 251 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 RNASE8Q8TDE3 154 aaKnown RBP5.79□□□□□ -1.48
VPS39-213ENST00000570062 KIR2DL4Q99706 377 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 OVOL2Q9BRP0 275 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 TMEM70Q9BUB7 260 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 NIT2Q9NQR4 276 aa5.79□□□□□ -1.48
VPS39-213ENST00000570062 IGHV1-24A0A0C4DH33 117 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 RS1O15537 224 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 IGLL1P15814 213 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 RPL35AP18077 110 aaKnown RBP5.78□□□□□ -1.48
VPS39-213ENST00000570062 AZU1P20160 251 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 LINC00315P59091 139 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 ZNF56Q15929 161 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 Q6ZWC4 215 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 CSNK1G2-AS1Q8NCQ2 148 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 SMIM2Q9BVW6 85 aa5.78□□□□□ -1.48
VPS39-213ENST00000570062 IGHV3OR16-12A0A075B7B8 117 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 TRAV4A0A0B4J268 109 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 TRBV10-1A0A0K0K1A3 114 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 TRBV27A0A0K0K1C4 114 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 TEX48A0A1B0GUV7 120 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 NCR2O95944 276 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 KRTDAPP60985 99 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 EGFEM1PQ0D2K5 195 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 SMAGPQ0VAQ4 97 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 PYY3Q5JQD4 70 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 SUMO4Q6EEV6 95 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 OR4C5Q8NGB2 326 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 IL17DQ8TAD2 202 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 URB1-AS1Q96HZ7 61 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 C18orf15Q96N68 181 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 TNFRSF18Q9Y5U5 241 aa5.77□□□□□ -1.49
VPS39-213ENST00000570062 IGLV2-18A0A075B6J9 118 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 SMKR1H3BMG3 65 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 M0QY20 66 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 SPRY2O43597 315 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 NUDT3O95989 172 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 IGHV3-53P01767 116 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 GIG44P09565 113 aaPredicted RBP5.76□□□□□ -1.49
VPS39-213ENST00000570062 MIFP14174 115 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 POLR2KP53803 58 aaKnown RBP5.76□□□□□ -1.49
VPS39-213ENST00000570062 RHOHQ15669 191 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 FAM74A4Q5TZK3 123 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 CFAP126Q5VTH2 177 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 FAM19A2Q8N3H0 131 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 TP53TG1Q9Y2A0 90 aa5.76□□□□□ -1.49
VPS39-213ENST00000570062 A0A087WWL8 130 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 TRGV1A0A0A0MS02 117 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 LYRM9A8MSI8 78 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 HSBP1L1C9JCN9 74 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 TSTD3H0UI37 97 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 SYS1-DBNDD2H3BUS1 97 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 I3L3M4 83 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 NPSP0C0P6 89 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 C3orf79P0CE67 100 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 PAPPA-AS1Q5QFB9 102 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 NBEAL2Q6ZNJ1 2754 aa5.75□□□□□ -1.49
VPS39-213ENST00000570062 TRGV2A0A075B6R0 118 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 TRAV26-2A0A0B4J265 109 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 TRBV6-4A0A1B0GX49 114 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 SDHAF1A6NFY7 115 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.74□□□□□ -1.49
VPS39-213ENST00000570062 RPL36AP83881 106 aaKnown RBP5.74□□□□□ -1.49
VPS39-213ENST00000570062 TMEM97Q5BJF2 176 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 LGALS9CQ6DKI2 356 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 UFSP1Q6NVU6 142 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 RPL36ALQ969Q0 106 aaKnown RBP5.74□□□□□ -1.49
VPS39-213ENST00000570062 IFI27L1Q96BM0 104 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 TMEM141Q96I45 108 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 NOP10Q9NPE3 64 aaKnown RBP5.74□□□□□ -1.49
VPS39-213ENST00000570062 CYSLTR1Q9Y271 337 aa5.74□□□□□ -1.49
VPS39-213ENST00000570062 IGHV4-30-4P0DP06 118 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 GATA1P15976 413 aaPredicted RBP5.73□□□□□ -1.49
VPS39-213ENST00000570062 PKIAP61925 76 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 Q6ZN92 141 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 TEX43Q6ZNM6 134 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 ERASQ7Z444 233 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 DAZ4Q86SG3 579 aaKnown RBP5.73□□□□□ -1.49
VPS39-213ENST00000570062 TOMM6Q96B49 74 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 RNF183Q96D59 192 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 PRADC1Q9BSG0 188 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 VAMP8Q9BV40 100 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 WFDC10AQ9H1F0 79 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 JPT2Q9H910 190 aa5.73□□□□□ -1.49
VPS39-213ENST00000570062 DAZ3Q9NR90 486 aaKnown RBP5.73□□□□□ -1.49
VPS39-213ENST00000570062 MRPL16Q9NX20 251 aaKnown RBP5.73□□□□□ -1.49
VPS39-213ENST00000570062 TRAV12-1A0A0B4J245 112 aa5.72□□□□□ -1.49
VPS39-213ENST00000570062 PRSS1P07477 247 aa5.72□□□□□ -1.49
VPS39-213ENST00000570062 CRYBA4P53673 196 aa5.72□□□□□ -1.49
VPS39-213ENST00000570062 LINC01545Q5VT33 79 aa5.72□□□□□ -1.49
VPS39-213ENST00000570062 RPL39LQ96EH5 51 aaKnown RBP5.72□□□□□ -1.49
VPS39-213ENST00000570062 TIMM17AQ99595 171 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms