RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 GCHFRP30047 84 aa9.98□□□□□ -0.81
CLK3-223ENST00000568488 CDC34P49427 236 aaPredicted RBP9.98□□□□□ -0.81
CLK3-223ENST00000568488 PRR27Q6MZM9 219 aa9.98□□□□□ -0.81
CLK3-223ENST00000568488 C20orf203Q8NBC4 194 aa9.98□□□□□ -0.81
CLK3-223ENST00000568488 STAG3L2P0CL84 134 aa9.97□□□□□ -0.81
CLK3-223ENST00000568488 STAG3L3P0CL85 134 aa9.97□□□□□ -0.81
CLK3-223ENST00000568488 CFAP161Q6P656 301 aa9.97□□□□□ -0.81
CLK3-223ENST00000568488 C15orf56Q8N910 161 aa9.97□□□□□ -0.81
CLK3-223ENST00000568488 TRAV26-2A0A0B4J265 109 aa9.96□□□□□ -0.82
CLK3-223ENST00000568488 IGHV1-24A0A0C4DH33 117 aa9.96□□□□□ -0.82
CLK3-223ENST00000568488 LCE2AQ5TA79 106 aaPredicted RBP9.96□□□□□ -0.82
CLK3-223ENST00000568488 IGLV4-60A0A075B6I1 120 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 GAGE12HA6NDE8 117 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 PRR4Q16378 134 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 IQCJQ1A5X6 159 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 ZNF664Q8N3J9 261 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 SUN5Q8TC36 379 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 RAB24Q969Q5 203 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 GFRA4Q9GZZ7 299 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 WFDC1Q9HC57 220 aa9.95□□□□□ -0.82
CLK3-223ENST00000568488 A6NHS1 94 aa9.94□□□□□ -0.82
CLK3-223ENST00000568488 FAM162BQ5T6X4 162 aa9.94□□□□□ -0.82
CLK3-223ENST00000568488 Q86TA4 180 aa9.94□□□□□ -0.82
CLK3-223ENST00000568488 TMEM167BQ9NRX6 74 aa9.94□□□□□ -0.82
CLK3-223ENST00000568488 PSORS1C2Q9UIG4 136 aa9.94□□□□□ -0.82
CLK3-223ENST00000568488 RPL12P30050 165 aaKnown RBP9.93□□□□□ -0.82
CLK3-223ENST00000568488 SULT1A2P50226 295 aa9.93□□□□□ -0.82
CLK3-223ENST00000568488 SSTP61278 116 aa9.93□□□□□ -0.82
CLK3-223ENST00000568488 CACNG7P62955 275 aa9.93□□□□□ -0.82
CLK3-223ENST00000568488 PRR26Q8N8Z3 221 aa9.93□□□□□ -0.82
CLK3-223ENST00000568488 AQP10Q96PS8 301 aa9.93□□□□□ -0.82
CLK3-223ENST00000568488 LINC00474Q9P2X8 69 aa9.93□□□□□ -0.82
CLK3-223ENST00000568488 IGKV3OR2-268A0A0C4DH90 116 aa9.92□□□□□ -0.82
CLK3-223ENST00000568488 DEFA3P59666 94 aa9.92□□□□□ -0.82
CLK3-223ENST00000568488 CYCSP99999 105 aaKnown RBP9.92□□□□□ -0.82
CLK3-223ENST00000568488 PPP1R1CQ8WVI7 109 aa9.92□□□□□ -0.82
CLK3-223ENST00000568488 FAM240BA0A1B0GVZ2 78 aa9.91□□□□□ -0.82
CLK3-223ENST00000568488 PEX7O00628 323 aa9.91□□□□□ -0.82
CLK3-223ENST00000568488 CXorf1O96002 111 aa9.91□□□□□ -0.82
CLK3-223ENST00000568488 LINC01559Q495D7 138 aa9.91□□□□□ -0.82
CLK3-223ENST00000568488 OR10AG1Q8NH19 301 aa9.91□□□□□ -0.82
CLK3-223ENST00000568488 ZNF471Q9BX82 626 aaPredicted RBP9.91□□□□□ -0.82
CLK3-223ENST00000568488 MUC21A0A140T8X8 626 aa9.9□□□□□ -0.82
CLK3-223ENST00000568488 A0A1B0GUV1 79 aa9.9□□□□□ -0.82
CLK3-223ENST00000568488 A0A1W2PRE2 83 aa9.9□□□□□ -0.82
CLK3-223ENST00000568488 INO80EQ8NBZ0 244 aaPredicted RBP9.9□□□□□ -0.82
CLK3-223ENST00000568488 TMEM243Q9BU79 118 aa9.9□□□□□ -0.82
CLK3-223ENST00000568488 UBE2G2P60604 165 aa9.89□□□□□ -0.83
CLK3-223ENST00000568488 ZNF674Q2M3X9 581 aa9.89□□□□□ -0.83
CLK3-223ENST00000568488 ZFP30Q9Y2G7 519 aa9.89□□□□□ -0.83
CLK3-223ENST00000568488 MPC2O95563 127 aa9.88□□□□□ -0.83
CLK3-223ENST00000568488 SMIM17P0DL12 118 aa9.88□□□□□ -0.83
CLK3-223ENST00000568488 SPANXN1Q5VSR9 72 aa9.88□□□□□ -0.83
CLK3-223ENST00000568488 UBE2L6O14933 153 aa9.87□□□□□ -0.83
CLK3-223ENST00000568488 COX8CQ7Z4L0 72 aa9.87□□□□□ -0.83
CLK3-223ENST00000568488 ACTR3CQ9C0K3 210 aaPredicted RBP9.87□□□□□ -0.83
CLK3-223ENST00000568488 PKIGQ9Y2B9 76 aa9.87□□□□□ -0.83
CLK3-223ENST00000568488 GVQW2A0A096LPI5 108 aaPredicted RBP9.86□□□□□ -0.83
CLK3-223ENST00000568488 MT-ND6P03923 174 aa9.86□□□□□ -0.83
CLK3-223ENST00000568488 PET100P0DJ07 73 aa9.86□□□□□ -0.83
CLK3-223ENST00000568488 UBE2G1P62253 170 aa9.86□□□□□ -0.83
CLK3-223ENST00000568488 HIST1H2BAQ96A08 127 aa9.86□□□□□ -0.83
CLK3-223ENST00000568488 H2BFSP57053 126 aa9.85□□□□□ -0.83
CLK3-223ENST00000568488 LINC00526Q96FQ7 95 aa9.85□□□□□ -0.83
CLK3-223ENST00000568488 MBP02144 154 aa9.84□□□□□ -0.83
CLK3-223ENST00000568488 ATP6V0CP27449 155 aa9.84□□□□□ -0.83
CLK3-223ENST00000568488 C1orf137Q5JT78 98 aa9.84□□□□□ -0.83
CLK3-223ENST00000568488 CHCHD10Q8WYQ3 142 aaPredicted RBP9.84□□□□□ -0.83
CLK3-223ENST00000568488 FMC1Q96HJ9 113 aa9.84□□□□□ -0.83
CLK3-223ENST00000568488 MGPP08493 103 aa9.83□□□□□ -0.84
CLK3-223ENST00000568488 NKX2-5P52952 324 aaPredicted RBP9.83□□□□□ -0.84
CLK3-223ENST00000568488 CARD19Q96LW7 228 aa9.83□□□□□ -0.84
CLK3-223ENST00000568488 M0QY20 66 aa9.82□□□□□ -0.84
CLK3-223ENST00000568488 GAGE2BQ13066 116 aa9.82□□□□□ -0.84
CLK3-223ENST00000568488 MZT2BQ6NZ67 158 aa9.82□□□□□ -0.84
CLK3-223ENST00000568488 A0A1W2PNN7 141 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 FAM74A7A6NL05 159 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 SNAI2O43623 268 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 AMTP48728 403 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 FER1L6-AS1Q8NA97 138 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 DIRC1Q969H9 104 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 AP1S3Q96PC3 154 aa9.81□□□□□ -0.84
CLK3-223ENST00000568488 PSMG3Q9BT73 122 aaPredicted RBP9.81□□□□□ -0.84
CLK3-223ENST00000568488 NKX6-2Q9C056 277 aaPredicted RBP9.81□□□□□ -0.84
CLK3-223ENST00000568488 PTTG1IPP53801 180 aa9.8□□□□□ -0.84
CLK3-223ENST00000568488 SERF2P84101 59 aa9.8□□□□□ -0.84
CLK3-223ENST00000568488 SSBP4Q9BWG4 385 aaPredicted RBP9.8□□□□□ -0.84
CLK3-223ENST00000568488 LTAP01374 205 aa9.79□□□□□ -0.84
CLK3-223ENST00000568488 OR5AL1P0C617 328 aa9.79□□□□□ -0.84
CLK3-223ENST00000568488 SUMO4Q6EEV6 95 aa9.79□□□□□ -0.84
CLK3-223ENST00000568488 TNFSF18Q9UNG2 199 aa9.79□□□□□ -0.84
CLK3-223ENST00000568488 CXCL1P09341 107 aa9.78□□□□□ -0.84
CLK3-223ENST00000568488 FOXI1Q12951 378 aa9.78□□□□□ -0.84
CLK3-223ENST00000568488 COTL1Q14019 142 aa9.78□□□□□ -0.84
CLK3-223ENST00000568488 IGLV1-50A0A075B6I6 118 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 SSNA1O43805 119 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 XCL1P47992 114 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 SYCNQ0VAF6 134 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 AMMECR1LQ6DCA0 310 aa9.77□□□□□ -0.85
CLK3-223ENST00000568488 PHF5AQ7RTV0 110 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms