RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 RPL18AQ02543 176 aaKnown RBP2.79□□□□□ -1.96
VPS35-204ENST00000563884 ISOC2Q96AB3 205 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 RABL2AQ9UBK7 228 aaPredicted RBP2.79□□□□□ -1.96
VPS35-204ENST00000563884 RABL2BQ9UNT1 228 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 GPR132Q9UNW8 380 aa2.79□□□□□ -1.96
VPS35-204ENST00000563884 LSM2Q9Y333 95 aaKnown RBP2.79□□□□□ -1.96
VPS35-204ENST00000563884 GPR98Q8WXG9 6306 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 TRBV25-1A0A075B6N4 114 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 AGPAT2O15120 278 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 GNRH2O43555 120 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 SULT1A2P50226 295 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 UBE2D3P61077 147 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 UBE2D2P62837 147 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 LGALSLQ3ZCW2 172 aaPredicted RBP2.78□□□□□ -1.96
VPS35-204ENST00000563884 C9orf116Q5BN46 136 aaPredicted RBP2.78□□□□□ -1.96
VPS35-204ENST00000563884 PATE2Q6UY27 113 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 PHF5AQ7RTV0 110 aaKnown RBP2.78□□□□□ -1.96
VPS35-204ENST00000563884 SELENOHQ8IZQ5 122 aaKnown RBP2.78□□□□□ -1.96
VPS35-204ENST00000563884 C14orf178Q8N769 122 aaPredicted RBP2.78□□□□□ -1.96
VPS35-204ENST00000563884 OR1L4Q8NGR5 311 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 PFDN5Q99471 154 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 FKBP14Q9NWM8 211 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 NDUFA12Q9UI09 145 aa2.78□□□□□ -1.96
VPS35-204ENST00000563884 C14orf166Q9Y224 244 aaKnown RBP2.78□□□□□ -1.96
VPS35-204ENST00000563884 FAM24AA6NFZ4 105 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 FNDC10F2Z333 226 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 TSC22D2O75157 780 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 PRSS3P35030 304 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 CAV2P51636 162 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 ZFP1Q6P2D0 407 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 Q6ZRG5 221 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 C8orf59Q8N0T1 100 aaPredicted RBP2.77□□□□□ -1.97
VPS35-204ENST00000563884 DAND5Q8N907 189 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 DYNC2LI1Q8TCX1 351 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 S100A16Q96FQ6 103 aaKnown RBP2.77□□□□□ -1.97
VPS35-204ENST00000563884 DUSP21Q9H596 190 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 NPVFQ9HCQ7 196 aa2.77□□□□□ -1.97
VPS35-204ENST00000563884 STRAPQ9Y3F4 350 aaKnown RBP2.77□□□□□ -1.97
VPS35-204ENST00000563884 FLGP20930 4061 aaPredicted RBP2.77□□□□□ -1.97
VPS35-204ENST00000563884 A0A0B4J2A0 478 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 TRDV1A0A1B0GX56 115 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 A0A1W2PNN7 141 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 ZNF861PO60384 105 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 CIB2O75838 187 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 IAPPP10997 89 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 RAB5CP51148 216 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 UBE2BP63146 152 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 SYCNQ0VAF6 134 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 RNASE10Q5GAN6 216 aaKnown RBP2.76□□□□□ -1.97
VPS35-204ENST00000563884 EXOC3-AS1Q8N2X6 119 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 SAMD12Q8N8I0 201 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 GLYATL2Q8WU03 294 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 TVP23CQ96ET8 276 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 NAA60Q9H7X0 242 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 SCN3BQ9NY72 215 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 TMEM14CQ9P0S9 112 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 SHPKQ9UHJ6 478 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 UBE2D4Q9Y2X8 147 aa2.76□□□□□ -1.97
VPS35-204ENST00000563884 IGHV1-58A0A0C4DH39 117 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 SMIM30A4D0T7 59 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 S100A4P26447 101 aaKnown RBP2.75□□□□□ -1.97
VPS35-204ENST00000563884 SLC38A11Q08AI6 406 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 FAM229BQ4G0N7 80 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 SPANXN5Q5MJ07 72 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 FAM74A4Q5TZK3 123 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 C22orf42Q6IC83 251 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 SPAG11AQ6PDA7 123 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 LHFPL1Q86WI0 220 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 MITD1Q8WV92 249 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 NDFIP1Q9BT67 221 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 WFDC1Q9HC57 220 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 LYRM2Q9NU23 88 aaPredicted RBP2.75□□□□□ -1.97
VPS35-204ENST00000563884 NDUFB11Q9NX14 153 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 FLVCR2Q9UPI3 526 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 KCNIP3Q9Y2W7 256 aa2.75□□□□□ -1.97
VPS35-204ENST00000563884 IGLV8-61A0A075B6I0 122 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 IGKV2D-26A0A0A0MRZ7 120 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 TRAV34A0A0B4J273 112 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 IGHV1-24A0A0C4DH33 117 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 DUXBA0A1W2PPF3 345 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 SYNGR2O43760 224 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 NUPR1O60356 82 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 APOMO95445 188 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 ANXA3P12429 323 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 RPL28P46779 137 aaKnown RBP2.74□□□□□ -1.97
VPS35-204ENST00000563884 TAS2R19P59542 299 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 GABARAPL2P60520 117 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 UBE2NLQ5JXB2 153 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 UFSP1Q6NVU6 142 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 FAM19A2Q8N3H0 131 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 PYDC1Q8WXC3 89 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 AQP10Q96PS8 301 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
VPS35-204ENST00000563884 IGLV4-69A0A075B6H9 119 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 UBE2L6O14933 153 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 SLC25A6P12236 298 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 MXD1Q05195 221 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 IQCJQ1A5X6 159 aa2.73□□□□□ -1.97
VPS35-204ENST00000563884 KRTAP19-6Q3LI70 58 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms